View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_43 (Length: 358)
Name: NF1763_high_43
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_43 |
 | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0072 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 642 - 983
Alignment:
| Q |
1 |
ttatgtgatccaccacgtgctgtccctaaaggtcgtccacgtactttacgaatgaaaggaagtttggaattgctcaaaaaaggttcaatgaagtgtagtt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
642 |
ttatgtgatccaccacgtgttgtccctaaaggtcgtccacgtactttacgaatgaaaggaagtttggaattgctcaaaaaaggttcaatgaagtgtagtt |
741 |
T |
|
| Q |
101 |
attgcaagggaaaaggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaactacatgttacaagtaattatgcaattagcttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
742 |
attgcaagggaaaaggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaactacatgttacaagtaattatgcaattagcttga |
841 |
T |
|
| Q |
201 |
atttttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgcgatattatcaatggtcagcgttcaaattccagtgttaaagctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
842 |
atttttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgtgatattatcaatggtcagcgttcaaattccagtgttaaagctt |
941 |
T |
|
| Q |
301 |
ctagttctagtttggttgtttaagaggtattggtattattat |
342 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
942 |
ctagttctagtttggttgattaagaggtattggtattattat |
983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 51167786 - 51168088
Alignment:
| Q |
4 |
tgtgatccaccacgtgctgtccctaaaggtcgtccacgtactttacgaatgaaaggaagtttggaattgctcaaaaaaggttcaatgaagtgtagttatt |
103 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| | |||||||||||| || | ||||||||||||| ||| ||| |||||| | |||||||||| |
|
|
| T |
51167786 |
tgtgatcctccacgtgcggtccctaaaggtcgtccatgcactttacgaatgcaaagcagtttggaattgcacaagaaaaattcaatcagttgtagttatt |
51167885 |
T |
|
| Q |
104 |
gcaagggaaaaggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaactacatgttacaagtaattatgcaattagcttgaatt |
203 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
51167886 |
gcaatggaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaattacatgttacaagtaattgtgcagttaatttgaatt |
51167985 |
T |
|
| Q |
204 |
tttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgcgatattatcaatggtcagcgttcaaattccagtgttaaagcttcta |
303 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||||||| |||||||| ||||| ||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
51167986 |
tttcattttaccatgccaagtttattcagttacaaaccaatgtcctttaggtgtgatatcatcaatggtcaactttcaaattccaatgttaaagcttcta |
51168085 |
T |
|
| Q |
304 |
gtt |
306 |
Q |
| |
|
||| |
|
|
| T |
51168086 |
gtt |
51168088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 65788 - 66060
Alignment:
| Q |
4 |
tgtgatccaccacgtgctgtccctaaaggtcgtccacgtactttacgaatgaaaggaagtttggaattgctcaaaaaaggttcaatgaagtgtagttatt |
103 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||| |||||| |||||| ||| ||| |||||| | |||||||||| |
|
|
| T |
65788 |
tgtgatcctccacgtgcggtccctaaaggtcgtccacgcactttacaaatgaaaggcagtttgcaattgcacaagaaaaattcaatcagttgtagttatt |
65887 |
T |
|
| Q |
104 |
gcaagggaaaa-ggccataacaaacgtagttgtccaagtttaaaacatggaaggtatcttttaact-acatgttacaagtaattatgcaattagcttgaa |
201 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||| | |||| ||| ||||| |
|
|
| T |
65888 |
gcaattgaaaaaggccacaacaaacgtagatgtccaagtttaaaacatggaaggtatcttaaaatttacatgttacaagtaactgtgcagttaatttgaa |
65987 |
T |
|
| Q |
202 |
tttttcattttaccatgttaagttgattcagtgacaaaccaatgtcttttaggtgcgatattatcaatggtca |
274 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
65988 |
tttttcattttaccatgccaagtttattcaattacaaaccaatgtcttttaggtgtgatatcatcaatggtca |
66060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 19330708 - 19330768
Alignment:
| Q |
28 |
aaaggtcgtccacgtactttacgaatgaaaggaagtttggaattgctcaaaaaaggttcaa |
88 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
19330708 |
aaaggtcgtccatgcactctacgaatgaaaggcagtttggaattgtacaaaaaaggttcaa |
19330768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University