View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_44 (Length: 357)
Name: NF1763_high_44
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 34085027 - 34084702
Alignment:
| Q |
15 |
catcatgtcattgttgaagcgttcatggagacatgtgaagaaatatttcctaagaagctttgtggtgatggtagacgtgtgtgaaggacatgtgaaggta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34085027 |
catcatgtcattgttgaagcgttcatggagacatgtgaagaaatatttcctaagaagctttgtggtgatggtagacgtgtgtgaaggacatgtgaaggca |
34084928 |
T |
|
| Q |
115 |
ttgaagtcacacatggaaattaatgctgcatgagaaatttgaggtttgaaattgatctaattc----annnnnnnnnnggggaaaaattgagatattatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34084927 |
ttgaagtcacacatggaaattaatgctgcatgagaaatttgaggtttgaaattgatctaattctttttttttttttttggggaaaaattgagatattatt |
34084828 |
T |
|
| Q |
211 |
tagtcatagtttctgatctatttaaatctataatggtttgatacttatttggattatatgtattcattacgattactatatacaaatctaatcacattca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34084827 |
tagtcatagtttctgatctatttaaatctataatggtttgatacttatttggattatatgtattcattacgattactatatacaaatctaatcacattca |
34084728 |
T |
|
| Q |
311 |
ttcaca-tttgagcaatcacgatatg |
335 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
34084727 |
ttcacattttgagcaatcacgatatg |
34084702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University