View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_45 (Length: 356)
Name: NF1763_high_45
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 54307427 - 54307096
Alignment:
| Q |
7 |
aatataacattcatttctgtacattcatttaaaagaaatatggacataacaaactactccatccattccacaatataatttattttaaccaaaaatattg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54307427 |
aatataacattcatttctgtacattcatttaaaagaaaaatggacataacaaactactccatccattccacaatataatttattttaaccaaaaatattg |
54307328 |
T |
|
| Q |
107 |
tcatgtcattttatattatcaatgaaattttaatttttgttctttatataaagatatcggttgaacaagtgaccaactcatgtggttaacgagctctccc |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54307327 |
tcatgtcattttatattatcaaagaaattttaatttttgttctttatataaatatattggttgaacaagtgaccaactcatgtggttaacgagctctccc |
54307228 |
T |
|
| Q |
207 |
tggaagtacgaaacaattcttaattaagcacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaagta |
306 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54307227 |
tggaaagaagaaacaattcttaattaagcacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaagta |
54307128 |
T |
|
| Q |
307 |
aaccataatttacatggatagtaaaaagcaat |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
54307127 |
aaccataatttacatggatagtaaaaagcaat |
54307096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 54301775 - 54301677
Alignment:
| Q |
235 |
cacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaagtaaaccataatttacatggatagtaaaaa |
333 |
Q |
| |
|
||||||||| ||| || |||||||||||||| |||||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
54301775 |
cacaagaaaagtaccatccttaacaaagcaatatgagtatttacatccaagtatccaatgttctactaagtaaaccataatttacacagatagcaaaaa |
54301677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 54302070 - 54302035
Alignment:
| Q |
123 |
tatcaatgaaattttaatttttgttctttatataaa |
158 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54302070 |
tatcaatgaaattttattttttgttctttatataaa |
54302035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University