View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_46 (Length: 346)
Name: NF1763_high_46
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 14812604 - 14812285
Alignment:
| Q |
18 |
gtaacttccatagttttgatgatcctgttgaattactcttcaccgcnnnnnnnggattccactcgcagtaagttccttccaccgccgcagaactcgtcgc |
117 |
Q |
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| T |
14812604 |
gtaacttccatagttttgatgatcctgttgaattactcttcaccgctttttttggattccactcgcagtaagttccttccaccgccgcagaactcgtcgc |
14812505 |
T |
|
| Q |
118 |
tgtcttcgacgaagacggtgattcgacgaaaaatttcctcaccggtgaacggtttccagattcattatcgtaatcgtcggtgaaatgaagatcctgaccg |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812504 |
tgtcttcgacgaagacggtgattccacgaaaaatttcctcaccggtgaacggtttccagattcattatcgtaatcgtcggtgaaatgaagatcctgaccg |
14812405 |
T |
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| Q |
218 |
nnnnnnnnnnnnntcggacgaatctgacctttatcgaacacatcgtcagcggaaatcggtgaacctttaggatctgcgaaaacaaatgtaaactcatcat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812404 |
aaaaaaggaaaaatcggacgaatctgacctttatcgaacacatcgtcagcggaaatcggtgaacctttaggatctgcgaaaacaaatgtaaactcatcat |
14812305 |
T |
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| Q |
318 |
catcttcatcttcttcttct |
337 |
Q |
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|||||||||||||||||||| |
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| T |
14812304 |
catcttcatcttcttcttct |
14812285 |
T |
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