View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_48 (Length: 346)
Name: NF1763_high_48
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 36 - 332
Target Start/End: Original strand, 16686388 - 16686687
Alignment:
| Q |
36 |
aatacattattttgctttaacgatttggtctcttaagactcaagtgaccgaagtttaaggctacatcca---tctgcttctgatgtttgccaaccaaatc |
132 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
16686388 |
aatacattaattttctttaacgatttggtctcttaagactcaagtgaccgaagtttaaggctacaaccaacttctgcttctgatgtttgccaaccaaatc |
16686487 |
T |
|
| Q |
133 |
ccaaaattttagttatcaaaactaactaaccacattattaaatagcaatgtccttgtcctaaaaaattgcacaaagaaatagaatctaatagagaaaatt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16686488 |
ccaaaattttagttatcaaaactaactaaccacattataaaatagcaatgtccttgtccttaaaaattgcacaaagaaatagaatctaatagagagaatt |
16686587 |
T |
|
| Q |
233 |
tcttgtgtcgccatgctttattgatcttgacctttcccataaaccaacctttggcattgcataattaagttacaccaaatatcccacagaaccaaaaatc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16686588 |
tcttgtgtcgccatgctttattgatcttgacctttcccataaaccaacctttggcattgcataattaagttataccaaatatcccacagaaccaaaaatc |
16686687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University