View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_50 (Length: 338)
Name: NF1763_high_50
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 22454880 - 22455015
Alignment:
| Q |
185 |
ctattatgcagaaggatttgtaaatttgtgttcaatgatatatatggaggaatgagcattgagttatctgagatcaatagagagattgaggccattagag |
284 |
Q |
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| T |
22454880 |
ctattatgcagaaggatttgtaaatttgtgttcaatgatatatatggaggaatgagcatagagttatctgagatcaatagagagattgaggccattagag |
22454979 |
T |
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| Q |
285 |
accatgaaagtggtaattctttcatatctttatttg |
320 |
Q |
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| T |
22454980 |
actataaaagtggtgattctttcatatctttatttg |
22455015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 22473436 - 22473571
Alignment:
| Q |
185 |
ctattatgcagaaggatttgtaaatttgtgttcaatgatatatatggaggaatgagcattgagttatctgagatcaatagagagattgaggccattagag |
284 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22473436 |
ctattatgcagaaggatttgtaaatttgttttcaatgatatatatggaggaatgagcatagagttatctgagatcaatagagagattgaggccattagag |
22473535 |
T |
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| Q |
285 |
accatgaaagtggtaattctttcatatctttatttg |
320 |
Q |
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|| || |||||||| ||||||||||||||||||||| |
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| T |
22473536 |
actataaaagtggtgattctttcatatctttatttg |
22473571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 22454713 - 22454791
Alignment:
| Q |
18 |
tgttaatggtaagaaactggatgttggcgtagcgcat-attgaagggttgaaaaattcttccgttgatttatctcatcc |
95 |
Q |
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| T |
22454713 |
tgttaatggtaagaaactggatgttggcgtagcgcattattgaagggttgaaaaattcttccgttgatttatctcatcc |
22454791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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