View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_53 (Length: 333)
Name: NF1763_high_53
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_53 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 142 - 327
Target Start/End: Original strand, 44557525 - 44557707
Alignment:
| Q |
142 |
agacttacctacctctcctgagaggaggtgttcattagcacataccctatagataagacctttttcgtgtacttaaacaatttcccttattttcattgac |
241 |
Q |
| |
|
||||||||||||||||| | | |||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44557525 |
agacttacctacctctctcaaaaagaggtgttcattagcatataccctacagataagacctttttcgtgtacttgaacaatttcccttattttcattgac |
44557624 |
T |
|
| Q |
242 |
tgaacgtggactgaggttatgaaataactggtcttataagttataataatgatcatctaaaattaaaataaggaagttcatctcac |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
44557625 |
tgaacgtggactgaggttatgaaataactggtcttataagtt---ataatcatcatctaaaattaaaataaggaagttcatttcac |
44557707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 44557407 - 44557462
Alignment:
| Q |
24 |
gccaattaaatttcttgaaggtcataatacacatatttgtgatgaattcgctagta |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44557407 |
gccaattaaatttcttgaaggtcataatacacatatttgtgatgaattcgctagta |
44557462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 44550966 - 44551024
Alignment:
| Q |
222 |
tttcccttattttcattgactgaacgtggactgaggttatgaaataactggtcttataa |
280 |
Q |
| |
|
||||||||||||||| |||| || ||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
44550966 |
tttcccttattttcactgaccgagagtggactgaagttatgaagtaacttgtcttataa |
44551024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University