View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_54 (Length: 332)

Name: NF1763_high_54
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_54
NF1763_high_54
[»] chr6 (29 HSPs)
chr6 (53-317)||(5137218-5137482)
chr6 (53-317)||(5102166-5102430)
chr6 (53-317)||(5350653-5350917)
chr6 (53-317)||(5426175-5426439)
chr6 (14-155)||(5097165-5097306)
chr6 (56-317)||(5447846-5448107)
chr6 (138-317)||(5128054-5128233)
chr6 (137-314)||(5096976-5097153)
chr6 (137-317)||(5157264-5157444)
chr6 (137-317)||(5370836-5371016)
chr6 (197-317)||(5066390-5066510)
chr6 (50-142)||(5354106-5354198)
chr6 (138-278)||(2938396-2938536)
chr6 (53-147)||(5157150-5157244)
chr6 (53-142)||(5397447-5397536)
chr6 (194-314)||(5073601-5073721)
chr6 (194-313)||(5383595-5383714)
chr6 (53-155)||(5127939-5128041)
chr6 (53-155)||(5371028-5371130)
chr6 (53-142)||(5434685-5434774)
chr6 (197-276)||(5397256-5397335)
chr6 (197-317)||(5177007-5177127)
chr6 (197-317)||(5278834-5278954)
chr6 (37-126)||(5243390-5243480)
chr6 (54-123)||(5181474-5181543)
chr6 (197-278)||(5689855-5689936)
chr6 (50-126)||(5066186-5066262)
chr6 (197-280)||(5181638-5181721)
chr6 (69-117)||(5256902-5256950)
[»] chr7 (1 HSPs)
chr7 (54-280)||(36213382-36213608)
[»] scaffold0294 (1 HSPs)
scaffold0294 (236-313)||(8635-8712)
[»] chr5 (2 HSPs)
chr5 (53-126)||(8878113-8878186)
chr5 (245-314)||(8877877-8877946)
[»] chr3 (4 HSPs)
chr3 (197-278)||(47986597-47986678)
chr3 (197-278)||(47995884-47995965)
chr3 (197-278)||(48005171-48005252)
chr3 (197-278)||(48014456-48014537)
[»] chr4 (1 HSPs)
chr4 (79-123)||(6651541-6651585)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 53 - 317
Target Start/End: Original strand, 5137218 - 5137482
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacg 152  Q
    |||||||||| |||| | ||||||| |||||| ||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  5137218 caaacctgtaaaattatatctttcagaatattagtggcttggcaattcattccaatttgaattaaaagagacttcaaggaatgttttgatacttgtgacg 5137317  T
Q  153 tagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccac 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5137318 tagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccac 5137417  T
Q  253 ccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  5137418 ccaaagacttcgaagacttggaaggtacacgaaaatcgatgatagttcgtgggaactactatgtg 5137482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 53 - 317
Target Start/End: Original strand, 5102166 - 5102430
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacg 152  Q
    |||||||||| |||| | ||||||| |||||| ||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  5102166 caaacctgtaaaattatatctttcagaatattagtggcttggcaattcattccaatttgaattaaaagagacttcaaggaatgttttgatacttgtgacg 5102265  T
Q  153 tagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccac 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5102266 tagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccac 5102365  T
Q  253 ccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  5102366 ccaaagacttcgaagatttggaaggtacatggaaatcgatgatagttcgtgggaactactatgtg 5102430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 53 - 317
Target Start/End: Complemental strand, 5350917 - 5350653
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacg 152  Q
    |||||||||| |||| ||||||||| |||||| ||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||| |    
T  5350917 caaacctgtaaaattatctctttcagaatattagtggcttggcaattcattccaatttgaattaaaagagacttcaaggaatgttttgatacttttgatg 5350818  T
Q  153 tagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccac 252  Q
    ||| || ||||| |||||||||||||  |||| ||| || |||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||    
T  5350817 tagctgtagttgattccaactccttataatttgtggcatacaaggcatccaaaattattgctgcatcatgagaaagttgaagttccgagctacactccac 5350718  T
Q  253 ccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
     ||||||||| |||||||||||||  ||  |||||||||||||||||  ||||||||||||||||    
T  5350717 acaaagactttgaagacttggaagacactgggaaatcgatgatagttcctgggaactactatgtg 5350653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 53 - 317
Target Start/End: Complemental strand, 5426439 - 5426175
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacg 152  Q
    |||||||||| |||| ||||||||| |||||  | | ||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||| || |    
T  5426439 caaacctgtaaaattatctctttcagaatatcagaggcttggcaattcattccaatttgaattaaaagagattttaaggaatgttttgatacttgggatg 5426340  T
Q  153 tagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccac 252  Q
    |||  | |||||||||||||||||||  | || ||| || ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  5426339 tagcagtagttggttccaactccttataacttgtggcatacaaggcatctaaaattattgctgcatcatgagaaagttgaagttctgagctgcactccac 5426240  T
Q  253 ccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
    |||||| ||| ||||| |||||||||||  |||||||||||||||||  |||||| |||||||||    
T  5426239 ccaaagcctttgaagatttggaaggtactgggaaatcgatgatagttcctgggaattactatgtg 5426175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 5097306 - 5097165
Alignment:
Q  14 agacaaacatacaaggggggcaaagagagatagataagacaaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaa 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5097306 agacaaacatacaaggggggaaaagagagatagataagacaaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaa 5097207  T
Q  114 ttaaaagagacttgaaggaatgttttgatacttgtgacgtag 155  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  5097206 ttaaaagagacttgaaggaatgttctgatacttgtgatgtag 5097165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 56 - 317
Target Start/End: Complemental strand, 5448107 - 5447846
Alignment:
Q  56 acctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacgtag 155  Q
    ||||||| |||| ||||||||| |||||  ||||||| ||||||| |||| |||||||||||||||||||| ||| |||| ||||||| |||||| |||     
T  5448107 acctgtaaaattatctctttcagaatatcagtgacttcgcaattcattccaatttgaattaaaagagacttcaagaaatggtttgatatttgtgatgtaa 5448008  T
Q  156 ttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccaccca 255  Q
     ||| ||| ||||||||||||||  |||| ||| || ||| |||||||||||||||||||| ||||||||||||||| ||||||| ||| ||| ||||||    
T  5448007 ctgccgttagttccaactccttataatttgtggcatacaaagcatccaaaattattgctgcctcatgagaaagttgaagttctgagctgaactgcaccca 5447908  T
Q  256 aagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
    |||||||||||||||||| ||||||  ||||| |||||||||||  || |||||||| ||||    
T  5447907 aagacttcgaagacttggtaggtactgggaaaacgatgatagttcctgagaactactgtgtg 5447846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 138 - 317
Target Start/End: Original strand, 5128054 - 5128233
Alignment:
Q  138 ttgatacttgtgacgtagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttc 237  Q
    ||||||||||||| ||| |||||||| ||||||||||||||  |||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||    
T  5128054 ttgatacttgtgatgtacttgcagtttgttccaactccttataatttgtggcatacaaggcatccaaaattattgctgcatcatgagaaagttgaagttc 5128153  T
Q  238 tgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
    ||| |||||||||| ||||||||||||||||||||||||||||  ||| ||||| ||||||| |||||||||||||||||    
T  5128154 tgagctgcactccatccaaagacttcgaagacttggaaggtactgggacatcgacgatagttcgtgggaactactatgtg 5128233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 314
Target Start/End: Complemental strand, 5097153 - 5096976
Alignment:
Q  137 tttgatacttgtgacgtagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgtt 236  Q
    |||||||| ||||| ||| ||||| ||| ||| ||| |||||  || | ||| ||  |||||||||||||||||||| |||||||||||||||||| |||    
T  5097153 tttgatacctgtgatgtaattgcaattgattcaaaccccttataatctgtggcatataaggcatccaaaattattgcagcatcatgagaaagttgaagtt 5097054  T
Q  237 ctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactat 314  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||  |||||||||||||    
T  5097053 ctgagctgcactccacccaaagacttcgaagacttggaaggtacttggaaatcgataatagttcatgggaactactat 5096976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 137 - 317
Target Start/End: Original strand, 5157264 - 5157444
Alignment:
Q  137 tttgatacttgtgacgtagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgtt 236  Q
    ||||||| |||||| |||| || |||||||||||| | ||||  |||| ||| || || ||||||||||||||||||||||||||||||||||||| |||    
T  5157264 tttgataattgtgatgtagctgtagttggttccaaattcttagaatttgtggcatacagggcatccaaaattattgctgcatcatgagaaagttgaagtt 5157363  T
Q  237 ctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
    | || |||||||||||||| ||||||||||||||||||||  ||  |||||||||||||||||  |||||| |||||||||    
T  5157364 ccgagctgcactccacccatagacttcgaagacttggaagacactgggaaatcgatgatagttcctgggaattactatgtg 5157444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 137 - 317
Target Start/End: Complemental strand, 5371016 - 5370836
Alignment:
Q  137 tttgatacttgtgacgtagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgtt 236  Q
    |||||||||||||| ||| ||||||||||||||| |||||||  || ||| | ||  ||| ||||||||||| ||||||||||||||||||||||| |||    
T  5371016 tttgatacttgtgatgtaattgcagttggttccatctccttataatctatcgcatataagacatccaaaattgttgctgcatcatgagaaagttgaagtt 5370917  T
Q  237 ctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactatgtg 317  Q
    | || || || ||||||||||||||||||||| |||||||||||  | |||| ||||||||||  ||||||||||||||||    
T  5370916 ccgagctacattccacccaaagacttcgaagaattggaaggtacttgaaaattgatgatagttcatgggaactactatgtg 5370836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 5066390 - 5066510
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgata 296  Q
    |||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  5066390 gcatccaatattattgttgcatcattagaaagttgatgttctgaactgcactccacccaaagacttcgaagacttggaaggtacttggaaattgatgata 5066489  T
Q  297 gtttgtgggaactactatgtg 317  Q
    |||  ||||| ||||||||||    
T  5066490 gttcatgggagctactatgtg 5066510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 5354106 - 5354198
Alignment:
Q  50 agacaaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgat 142  Q
    ||||||||||| | |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  5354106 agacaaacctgcaaaattttctctttcagaatattagtgacttggcaattcattcccatttgaattaaaagagacttgaaggaatgttgtgat 5354198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 2938536 - 2938396
Alignment:
Q  138 ttgatacttgtgacgtagttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttc 237  Q
    ||||||||||||| ||| ||| ||||||||||| |||||||  || ||| | ||  ||| ||||||||| | |||||||||||||||||||||||  |||    
T  2938536 ttgatacttgtgatgtaattgtagttggttccatctccttataatctatcgcatataagacatccaaaactgttgctgcatcatgagaaagttgaaattc 2938437  T
Q  238 tgaactgcactccacccaaagacttcgaagacttggaaggt 278  Q
    ||| |  || ||||||||||||||| |||||||||||||||    
T  2938436 tgagcaacattccacccaaagacttggaagacttggaaggt 2938396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 5157150 - 5157244
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttg 147  Q
    |||||||||| |||| | ||||||| |||||| ||| ||||||||||| |||| ||||||||||||||||||||  |||||||||||||||||||    
T  5157150 caaacctgtaaaattatatctttcagaatattagtggcttggcaattcattccaatttgaattaaaagagacttcgaggaatgttttgatacttg 5157244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 5397536 - 5397447
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgat 142  Q
    |||||||||| |||| ||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||   |||||||||||||    
T  5397536 caaacctgtaaaattatctctttcagaatattggcaacttgacaattcgttcccatttgaattaaaagagacttcggggaatgttttgat 5397447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 5073601 - 5073721
Alignment:
Q  194 aaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatg 293  Q
    ||||||||||||||| || ||||||| |||||||||||| ||| ||| | ||| ||||||||||||| |||||| | |||||||||   |||||| ||||    
T  5073601 aaggcatccaaaattctttctgcatcttgagaaagttgaagttttgatccgcattccacccaaagacatcgaagccatggaaggtaattggaaatagatg 5073700  T
Q  294 atagtttgtgggaactactat 314  Q
    ||||||  |||||||||||||    
T  5073701 atagttcatgggaactactat 5073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 194 - 313
Target Start/End: Complemental strand, 5383714 - 5383595
Alignment:
Q  194 aaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatg 293  Q
    ||||| |||||||| ||||| ||||||||||||| |||| |||| || || |||| |||||||||||| |||| |||||||||||||  |||||| ||||    
T  5383714 aaggcttccaaaataattgcagcatcatgagaaacttgaagttccgagctacacttcacccaaagactgcgaatacttggaaggtacttggaaattgatg 5383615  T
Q  294 atagtttgtgggaactacta 313  Q
    |||| |  ||||||||||||    
T  5383614 ataggtcatgggaactacta 5383595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 5127939 - 5128041
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacg 152  Q
    |||||||||| |||  || |||||| |||||| ||||||||||||||| |||| ||||||||||| || |||||  |||||||||||||||||||||| |    
T  5127939 caaacctgtaaaataatccctttcagaatattagtgacttggcaattctttccaatttgaattaatagcgacttcgaggaatgttttgatacttgtgatg 5128038  T
Q  153 tag 155  Q
    |||    
T  5128039 tag 5128041  T

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Target: chr6; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 5371130 - 5371028
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacg 152  Q
    |||||||||| |||| ||||||||| |||||| || | | |||||||| |||| |||||||||||||||||| |  |||||||||||||||||||||| |    
T  5371130 caaacctgtaaaattatctctttcagaatattagttattcggcaattcattccaatttgaattaaaagagacgttgaggaatgttttgatacttgtgatg 5371031  T
Q  153 tag 155  Q
    |||    
T  5371030 tag 5371028  T

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Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 5434774 - 5434685
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgat 142  Q
    |||||||||| |||  ||||||  | ||| ||||||| || ||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  5434774 caaacctgtaaaatgatctcttcgagaatgttggtgagtttgcaattcattctcatttgaattaaaagagagttgaaggaatgttttgat 5434685  T

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Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 5397335 - 5397256
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaag 276  Q
    |||||||||||||||  ||||||| |||||||||||  ||| ||| |||| ||||| |||||||||||||| ||||||||    
T  5397335 gcatccaaaattatttttgcatcaagagaaagttgatcttcagaattgcaatccacgcaaagacttcgaagccttggaag 5397256  T

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Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 5177127 - 5177007
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgata 296  Q
    ||||||||||| |||  ||||||   |||||||||| |||||||||  ||||| ||||| ||||||||||| |||| |||||   ||||||| ||||| |    
T  5177127 gcatccaaaatgatttttgcatctacagaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggtcggaaatagatgaca 5177028  T
Q  297 gtttgtgggaactactatgtg 317  Q
    |||  || |||||||||||||    
T  5177027 gttcctgagaactactatgtg 5177007  T

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Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 5278954 - 5278834
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgata 296  Q
    ||||||||||| |||  ||||||   |||||||||| |||||||||  ||||| ||||| ||||||||||| |||| |||||   ||||||| ||||| |    
T  5278954 gcatccaaaatgatttttgcatctacagaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggtggtcggaaatagatgaca 5278855  T
Q  297 gtttgtgggaactactatgtg 317  Q
    |||  || |||||||||||||    
T  5278854 gttcctgagaactactatgtg 5278834  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 5243390 - 5243480
Alignment:
Q  37 agagagatagataa-gacaaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagactt 126  Q
    ||||||||||| || |||||||||||| ||| || ||||| | | ||||||| |||||||||||| |||||||||| |||| || ||||||    
T  5243390 agagagatagagaatgacaaacctgtaaaatgttttcttttagattattggttacttggcaattcattcccatttgtattagaacagactt 5243480  T

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Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 5181474 - 5181543
Alignment:
Q  54 aaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagaga 123  Q
    ||||||||| ||| || ||| ||| |||||||||||||||||||||| |||| |||||||| || |||||    
T  5181474 aaacctgtaaaatgttatctctcagaatattggtgacttggcaattcattcctatttgaataaacagaga 5181543  T

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Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 5689855 - 5689936
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggt 278  Q
    ||||||||||| |||  |||||| | |||||||||| |||||||||  ||||| ||||| ||||||||||| |||| |||||    
T  5689855 gcatccaaaatgatttttgcatcttcagaaagttgaagttctgaaccacactctacccatagacttcgaagccttgaaaggt 5689936  T

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Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 5066186 - 5066262
Alignment:
Q  50 agacaaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagactt 126  Q
    |||||||||||||  || || ||||||| | |||||||||||||||||||| | |||||||| |||| || ||||||    
T  5066186 agacaaacctgtaacatgttttctttcagattattggtgacttggcaattcatacccatttgtattagaacagactt 5066262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 5181638 - 5181721
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggtac 280  Q
    |||||||||||| || |||  || |||||||||||| ||||||| |  ||||| |||||||||| |||||| | ||||||||||    
T  5181638 gcatccaaaattctttctgtgtcttgagaaagttgaagttctgagccacactcaacccaaagacatcgaagccatggaaggtac 5181721  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 5256902 - 5256950
Alignment:
Q  69 tctctttcaaaatattggtgacttggcaattcgttcccatttgaattaa 117  Q
    ||||||| | |||||||||||| ||||||||  ||||||||||||||||    
T  5256902 tctctttgagaatattggtgacatggcaatttattcccatttgaattaa 5256950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 54 - 280
Target Start/End: Original strand, 36213382 - 36213608
Alignment:
Q  54 aaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagacttgaaggaatgttttgatacttgtgacgt 153  Q
    |||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||| |||| ||| || ||||||| | |||||||||| || ||    
T  36213382 aaacctgtacaattttctctttcaaaatattggaaagttggcaattcattcccatttgaatgaaaaaagatttcaaggaatttcttgatacttgcgatgt 36213481  T
Q  154 agttgcagttggttccaactccttacgatttatggtatgcaaggcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacc 253  Q
    |  || || | ||||||| ||||||  |||  ||| ||  |||||||||||||||||| ||||||||||||||||||||   ||||| ||||||| ||||    
T  36213482 atgtggagctagttccaattccttataattagtggcatataaggcatccaaaattatttctgcatcatgagaaagttgagactctgagctgcactgcacc 36213581  T
Q  254 caaagacttcgaagacttggaaggtac 280  Q
    ||||||||||| ||||| |||||||||    
T  36213582 caaagacttcgtagactcggaaggtac 36213608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 8635 - 8712
Alignment:
Q  236 tctgaactgcactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactacta 313  Q
    ||||| || |||| ||||||||||||||||| |||||||||||||  |||||| ||||||||||  ||||||||||||    
T  8635 tctgagctacacttcacccaaagacttcgaatacttggaaggtacttggaaattgatgatagttcctgggaactacta 8712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 8878186 - 8878113
Alignment:
Q  53 caaacctgtacaattttctctttcaaaatattggtgacttggcaattcgttcccatttgaattaaaagagactt 126  Q
    |||||||||| |||||||||||||| | |||| || | |||||||||| ||||||||||||| || ||||||||    
T  8878186 caaacctgtaaaattttctctttcagagtattagttaattggcaattcattcccatttgaataaatagagactt 8878113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 8877946 - 8877877
Alignment:
Q  245 cactccacccaaagacttcgaagacttggaaggtacacggaaatcgatgatagtttgtgggaactactat 314  Q
    |||||||| |||||||||||||||| |||||||| |   || || |||| ||||||||||||||||||||    
T  8877946 cactccactcaaagacttcgaagacctggaaggtgctttgatattgatgctagtttgtgggaactactat 8877877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 47986597 - 47986678
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggt 278  Q
    |||||||||||  ||  ||||||  |||||||||||| ||||||  |||| |||||||||||||||||||| ||| ||||||    
T  47986597 gcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggt 47986678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 47995884 - 47995965
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggt 278  Q
    |||||||||||  ||  ||||||  |||||||||||| ||||||  |||| |||||||||||||||||||| ||| ||||||    
T  47995884 gcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggt 47995965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 48005171 - 48005252
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggt 278  Q
    |||||||||||  ||  ||||||  |||||||||||| ||||||  |||| |||||||||||||||||||| ||| ||||||    
T  48005171 gcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggt 48005252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 48014456 - 48014537
Alignment:
Q  197 gcatccaaaattattgctgcatcatgagaaagttgacgttctgaactgcactccacccaaagacttcgaagacttggaaggt 278  Q
    |||||||||||  ||  ||||||  |||||||||||| ||||||  |||| |||||||||||||||||||| ||| ||||||    
T  48014456 gcatccaaaatattttttgcatccagagaaagttgacattctgagttgcaatccacccaaagacttcgaagcctttgaaggt 48014537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 6651585 - 6651541
Alignment:
Q  79 aatattggtgacttggcaattcgttcccatttgaattaaaagaga 123  Q
    |||||| | ||||||||| |||||||||||||||||||| |||||    
T  6651585 aatattagagacttggcatttcgttcccatttgaattaagagaga 6651541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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