View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_58 (Length: 311)
Name: NF1763_high_58
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_58 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 29784203 - 29784017
Alignment:
| Q |
123 |
cataatcccaaaattttattcttatcttactgcattctatggtccatagaaaacaaattagttctttaactcacaacctttctttaaacagtcaaggcta |
222 |
Q |
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| T |
29784203 |
cataatcccaaaattttattcttatcttactgcattctatggtccatataaaacaaattagttctttaactcacaacctttctttaaaaagtcaaggcta |
29784104 |
T |
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| Q |
223 |
cctttcaatgatgagaaccccattcccctttatgctttcaatttattccaaacttcacttcataagctagacggattaaaggtaaaatt |
311 |
Q |
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| T |
29784103 |
cctttcaatgatgagaatcccatccccctttatgctttcaatttattccaaacttcacttcataagct--acggtttaaaggtaaaatt |
29784017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 98 - 310
Target Start/End: Complemental strand, 29779521 - 29779300
Alignment:
| Q |
98 |
cataataagctaatatgagaagagacataatcccaaaa-ttttattcttatcttactgcattctatggtccatagaaaacaaattagttctttaactcac |
196 |
Q |
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| T |
29779521 |
cataataagctaatatgagaagaaacataatcctaaaaattttatgcttatcttactacattctatggttcatataaaacaaataagttctttaactcac |
29779422 |
T |
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| Q |
197 |
aacctttctttaaacag--------tcaaggctacctttcaatgatgagaaccccattcccctttatgctttcaatttattccaaacttcacttcataag |
288 |
Q |
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| T |
29779421 |
tacctttctttaaacagtcagggtctcagggctacctttcaatgatgagaatcacatccccctttatgctttcaatatattccaaacttgacttcataag |
29779322 |
T |
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| Q |
289 |
ctagacggattaaaggtaaaat |
310 |
Q |
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| T |
29779321 |
ctagatggattaaaggtcaaat |
29779300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 29785922 - 29785857
Alignment:
| Q |
16 |
atatagcatatatgaactcgaatcctctatagcagattcactataaagtcggtcgaagaagatcta |
81 |
Q |
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| T |
29785922 |
atatagcatatatgaactcgaatcctctataacgggttcaccataaagtcggtcgaagaagatcta |
29785857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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