View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_59 (Length: 307)

Name: NF1763_high_59
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_59
NF1763_high_59
[»] chr2 (1 HSPs)
chr2 (18-307)||(33815707-33815999)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 33815999 - 33815707
Alignment:
Q  18 atttctgcactttaataccctttattacacaattaacatagtttcaaccacaatagaatattcttaattcaaccacaatagcatagtttcatcgcaatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33815999 atttctgcactttaataccctttattacacaattaacatagtttcaaccacaatagcatattcttaattcaaccacaatagcatagtttcatcgcaatca 33815900  T
Q  118 aacaccataaaacacaaagctgctgccatgctttattacatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcctaagcac 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815899 aacaccataaaacacaaagctgctgccatgcattattacatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcctaagcac 33815800  T
Q  218 accttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttccatttgaatca---cccaacttaaatttgatgat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  33815799 accttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttccatttgaatcaccccccaacttaaatttgatgat 33815707  T

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