View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_60 (Length: 306)
Name: NF1763_high_60
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_60 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 38717241 - 38717510
Alignment:
| Q |
16 |
cagagatgtcgcagcgtcttgttgatgcagctcatcgcggtgacacggattctgccattgaatgtttagcgaatccattggtcgatgttaacttcattgg |
115 |
Q |
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| T |
38717241 |
cagagatgtcgcagcgtcttgttgatgcagctcatcgtggtgacacggattctgccattgaatgtttagcgaatccattggtggatgttaacttcattgg |
38717340 |
T |
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| Q |
116 |
aacggtcatgttgaagtccaaaacaatggagatcgtgcttcaagatgagtcacctcatcgagtaaattcagtgtatgaagagttcaaaatcgaggtcact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38717341 |
aacggtcatgttgaagtccaaaacaatggagatcgtgcttcaagatgagtcacctcatcgagtaaattcagtgtatgaagagttcaaaatcgaggtcact |
38717440 |
T |
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| Q |
216 |
gctctgtttttggctgcacattctggaaatttgacattaattcgtaaactactggtatgcaactgttccg |
285 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
38717441 |
gctctgtttttggctgcacattctggaaatttgacgttaattcgtaaactactggtatgcaaccgttccg |
38717510 |
T |
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