View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_63 (Length: 304)
Name: NF1763_high_63
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_63 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 3719323 - 3719130
Alignment:
| Q |
25 |
ggacactttttaaaatgacttaaaaatgtaagtttttgtgaaaatttgtataatcattaacttaaaaattgtaatag---actttttaaaacaataattt |
121 |
Q |
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| T |
3719323 |
ggacactttttaaaatgacttaaaaatataa-tttttgtgaaaatttgtataatcattaacttaaaaattgtaatagttgactttttaaaacaataattt |
3719225 |
T |
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| Q |
122 |
ataaatgtacgatccttaaatagtgttacgaatatcgattatagggaagtgataaaacgacaatatcgatcagtttgattaagtaaaatattgga |
216 |
Q |
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| T |
3719224 |
ataaatatacgatccttaaatagtgttacgaatatcgattatagggaagtgataaaacgacaatatcgatcagtttgattaagtaaaatattgga |
3719130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 3718928 - 3718838
Alignment:
| Q |
214 |
ggacaagttaattaggttacatatagaattgtcatgaagagggctttctttcaagttaaagttcatttaaattgctcatgttactaatggt |
304 |
Q |
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| T |
3718928 |
ggacaagttaattaggttacatatagaattgtcctgaagaggactttctttcaagttaaagttcatttaaattgctcatgttactaatggt |
3718838 |
T |
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