View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_7 (Length: 730)
Name: NF1763_high_7
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 311 - 714
Target Start/End: Complemental strand, 28141978 - 28141573
Alignment:
| Q |
311 |
cacacatatttgtgcatatacatctataaatgcatatatgtatgctaaattattgttatagtttatgtaacacggacacttctgatcaaaa--gtatatg |
408 |
Q |
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| T |
28141978 |
cacacatatttatgtatatacatctataaatgcatatatgcatgctaaattattgttatagtttctgtagcactgacacttctaatcaaagacgtatatg |
28141879 |
T |
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| Q |
409 |
agtaaaaacttcaattaattcattttttaaattattaccatcgacatatctatgtccgatatcattgtttgcgtcggtgctttataggttatatagttat |
508 |
Q |
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| T |
28141878 |
agtaaaaacttcaattaattcaatttttaaattattaccatcgacatatctatgtctgatatcattgtttgcgtcggtgctttataggttatatagttat |
28141779 |
T |
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| Q |
509 |
gtaacacatgcatgtattgtcgcaatttcatgcaattgtggatcacatggcctggtgtcatgatctttaaccatgcaatgataggatttgaaaatattac |
608 |
Q |
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| T |
28141778 |
gtaacacatgcatgtattgtcacaatttcatgcaattgtggatcacatggcctggtgtcatgatctttaaccaagcaatgataggatttgaaaatattac |
28141679 |
T |
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| Q |
609 |
tatattatgagttaatgttacaaannnnnnngttgatgtgtgtattgttactggcagataattaccattagatgccagcaagtgacaacgttgcaatgga |
708 |
Q |
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| T |
28141678 |
tatattatgagttaatgttacaagtttgtttgttgatgtgtgtattgttactggcagataattaccattagatgccagcaagtgacaacgttgcaatgga |
28141579 |
T |
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| Q |
709 |
aaatga |
714 |
Q |
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| T |
28141578 |
aaatga |
28141573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 28142280 - 28142054
Alignment:
| Q |
9 |
gaagcaaaggcattttatctgagtcagattctcgtatatgtgatttggaaattggaactattctattttaagaccttgaccctaaggttagggataatat |
108 |
Q |
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| T |
28142280 |
gaagcaaagacattttatctgagtcagattctcgtatatgtgatttggaaattggaactattctattttaagaccttgaccctaaggttagggataatat |
28142181 |
T |
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| Q |
109 |
ggtttaatcatgtttactttttcccttaccctttaaaaagtcacacttggaagctacatcataaaaacatgctaacggttttctttctttgcttctcata |
208 |
Q |
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| T |
28142180 |
ggtttaatcatgtttactttttcccttaccctttaaaaagtcacacttggaagctacatcataaaaacatgctaacggttttctttctttgcttctcata |
28142081 |
T |
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| Q |
209 |
actccctacgttctctctttaaactag |
235 |
Q |
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| T |
28142080 |
actccctacgttctctctttaaactag |
28142054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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