View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_70 (Length: 281)
Name: NF1763_high_70
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 27810777 - 27811036
Alignment:
| Q |
3 |
agtaaaatctaaaagaaaaatatatttattacttaggttaatagaggtagttgactattccacccatatcgtgtatgacttaatttctttaaaaaagaga |
102 |
Q |
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| T |
27810777 |
agtaaaatctaaaagaaaaa-atatttataacttaggttaatagaggtagttgactattccacccatatcatctatgacttaatttctttaaaaaagaga |
27810875 |
T |
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| Q |
103 |
gtttgtgaaaaattaattaagatacaatataaaacctaatttcagaaattagagtttgtgattgagattatctaccatttatatctatatatcaaacaat |
202 |
Q |
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| T |
27810876 |
gtttgtgaaaaattaattaagatacaatataaaacctaatat--aaaattagagtttgtgattcagattatctaccatttatatttatatatcaaacaat |
27810973 |
T |
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| Q |
203 |
agttttggacgtatagagtgttttgnnnnnnnctcaaatcttatatataatagatgttaaaaa |
265 |
Q |
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| T |
27810974 |
agttttggatgtatggagtgttttgaaaaaaactcaagttttatatataatagatgttaaaaa |
27811036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 27851757 - 27851815
Alignment:
| Q |
147 |
gaaattagagtttgtgattgagattatctaccatttatatctatatatcaaacaatagt |
205 |
Q |
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| T |
27851757 |
gaaactagagtttatgattcagattatccaccatttatatctatatatcaaacaatagt |
27851815 |
T |
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