View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_76 (Length: 269)
Name: NF1763_high_76
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_76 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 41625297 - 41625563
Alignment:
| Q |
7 |
gtaaatgggctttgaagggatggaaaggacgtattttgtatgctttatctgcttgggttcctgcttaagcaaaatgtccaaaaggtgttttgaatggtag |
106 |
Q |
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| T |
41625297 |
gtaaatgggttttgaagggatggaaaggacgtattttgtatgctttatctgcttgggttcctgcttaagcaaaatgtccaaaaggtgttttgaatggtag |
41625396 |
T |
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| Q |
107 |
attgaagtttcaaaaggaatagtgaagcaacacatactaattttgtattgaaaaatgaatttgttttcattggaatttatttttatgtctatgatatgat |
206 |
Q |
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| T |
41625397 |
attgaagtttcaaaaggaatagtgaaccaacacatactaattttgtattgaaaaatgaatttgttttcattggaatttatttttatgtctatgatatgat |
41625496 |
T |
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| Q |
207 |
ctgttgttgttgtcaagtgttaaaaagatgtatgtagatt----aacaagtcttactattccatcat |
269 |
Q |
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| T |
41625497 |
ctgttgttgttgtcaagtgttaaaaagatgtatgtagattagagaacaagtcttattgttccatcat |
41625563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 41621951 - 41622220
Alignment:
| Q |
7 |
gtaaatgggctttgaagggatggaaaggacgtattttgtatgctttatctgcttgggttcctgcttaagcaaaatgtccaaaaggtgttttgaatggtag |
106 |
Q |
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| T |
41621951 |
gtaagtgggttttgcagggatggaaaggacgcattttgaatgctttatctgcttgggttcctgcctaagcaaaatgtccaaaaagtgttttgaatggttg |
41622050 |
T |
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| Q |
107 |
attgaagtttcaaaaggaatagtgaagcaacacatactaattttgtattgaaaaatgaatttgttttcattggaatttatttttatgtctatgatatgat |
206 |
Q |
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| T |
41622051 |
actgaagtttcagaagggatagtgaaccaacacatgctaattttgtattgaaaaatgaatttgttttcattggaatttatttttatgtttataatatgat |
41622150 |
T |
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| Q |
207 |
ctg---ttgttgttgtcaagtgttaaaaagatgtatgtagatta----acaagtcttactattccatcat |
269 |
Q |
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| T |
41622151 |
ctgtttttgttgttgtcaagtgttaaaaagatgtatgtagattagaggacaagtcttactattccatcat |
41622220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 41628258 - 41628345
Alignment:
| Q |
7 |
gtaaatgggctttgaagggatggaaaggacgtattttgtatgctttatctgcttgggttcctgcttaagcaaaatgtccaaaaggtgt |
94 |
Q |
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| T |
41628258 |
gtaagtgggttttgcagggatggaagggacgcattttaaatgctttatcagcttgggttcctgcttaagcaaaatgtccaaaaggtgt |
41628345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 41619198 - 41619277
Alignment:
| Q |
169 |
gttttcattggaatttatttttatgtctatgat---atgatctgttgttgttgtcaagtgttaaaaagatgtatgtagat |
245 |
Q |
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| T |
41619198 |
gtttccattgaaatttctttttatgtctatgctgctatgatacgttgttagtgtcaagtgttaaaaagatgtatgtagat |
41619277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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