View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_81 (Length: 253)
Name: NF1763_high_81
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_81 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 25813411 - 25813185
Alignment:
| Q |
18 |
gctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgttt |
117 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25813411 |
gctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgttt |
25813312 |
T |
|
| Q |
118 |
gaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25813311 |
gaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcg |
25813212 |
T |
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| Q |
218 |
gtaagtcttaaaaaatttcagtataat |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
25813211 |
gtaagtcttaaaaaatttcagtataat |
25813185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 25788492 - 25788266
Alignment:
| Q |
18 |
gctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgttt |
117 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25788492 |
gctaagaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacattttcgatgattcgttt |
25788393 |
T |
|
| Q |
118 |
gaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25788392 |
gaaaacatgtctgctcaacagaacattgattttatttacaataatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcttcg |
25788293 |
T |
|
| Q |
218 |
gtaagtcttaaaaaatttcagtataat |
244 |
Q |
| |
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|||| ||||||| | ||||| |||||| |
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| T |
25788292 |
gtaaatcttaaatattttcattataat |
25788266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 25759268 - 25759494
Alignment:
| Q |
18 |
gctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
25759268 |
gctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcaatgatttgttt |
25759367 |
T |
|
| Q |
118 |
gaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcg |
217 |
Q |
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|
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25759368 |
gaaaacatgattgctcaacaaaacattgtttttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcg |
25759467 |
T |
|
| Q |
218 |
gtaagtcttaaaaaatttcagtataat |
244 |
Q |
| |
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|||||||||||| | ||||| |||||| |
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|
| T |
25759468 |
gtaagtcttaaatattttcattataat |
25759494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 25862864 - 25862694
Alignment:
| Q |
49 |
cctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgtttgaaaacatgtctgctcaacagaacattgatt |
148 |
Q |
| |
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|||||||| ||||| |||||| | || || |||||||| |||||||||| |||||| | ||| |||| ||||||| || |||||| || ||||||| |
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| T |
25862864 |
cctcttgctaatggccttatgggatcagtgattgatgtccactactacagcatctttggagatgagtttacaaacatgagtgttcaacaaaatattgatt |
25862765 |
T |
|
| Q |
149 |
ttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcggt |
219 |
Q |
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||||||||| ||||| |||||||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |
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| T |
25862764 |
atatttacaataatcgatcatcggatttgaattttgttacaacctcaaatggtcctcttatttttgtcggt |
25862694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 12405474 - 12405248
Alignment:
| Q |
18 |
gctaggaccctcagaacccaaggaactgtttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatcttcgatgattcgttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12405474 |
gctaggaccctcagaacccaaggaactctttcctcttgccaatggtcttatgaggtctgtaattgatgttcactactacaacatctttgatgattcgttt |
12405375 |
T |
|
| Q |
118 |
gaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcg |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12405374 |
gaaaacatgtctgctcaacagaacattgattttatttacaacaatcgttcatcggagttgaattttattacaacatcgaatggtcctcttactttcgtcg |
12405275 |
T |
|
| Q |
218 |
gtaagtcttaaaaaatttcagtataat |
244 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
12405274 |
gtaagtcttaaaaaatttcagtataat |
12405248 |
T |
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