View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_82 (Length: 249)
Name: NF1763_high_82
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_82 |
 |  |
|
| [»] chr6 (20 HSPs) |
 |  |
|
| [»] chr3 (4 HSPs) |
 |  |
|
| [»] scaffold0294 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 53 - 249
Target Start/End: Original strand, 5065365 - 5065563
Alignment:
| Q |
53 |
aaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtccatcatatataagataa |
152 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||| | ||||||||||| || |||||||||| |||||| |
|
|
| T |
5065365 |
aaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataa |
5065464 |
T |
 |
| Q |
153 |
actgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactactctctgctcctcctca |
249 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||| |
|
|
| T |
5065465 |
actgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactactctctgcccctcctca |
5065563 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 248
Target Start/End: Complemental strand, 5253919 - 5253715
Alignment:
| Q |
46 |
ttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtccatcatatat |
145 |
Q |
| |
|
|||| ||||| ||||||||||||| || ||||||||||||| || || |||||||| |||||||||||||| | ||||||||||| | | |||||||| |
|
|
| T |
5253919 |
ttctaacaaaacattcattttcataaccactactaacaataacattcatatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatat |
5253820 |
T |
 |
| Q |
146 |
aagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactactctctgctcc |
243 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| | | |||||| ||| || |
|
|
| T |
5253819 |
gagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactctttgcccc |
5253720 |
T |
 |
| Q |
244 |
tcctc |
248 |
Q |
| |
|
||||| |
|
|
| T |
5253719 |
tcctc |
5253715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 5065245 - 5065322
Alignment:
| Q |
8 |
tgttaagtcatcaaccggcgccacttgaggagagacttttctgacaaagcattcattttcatcactactactaacaat |
85 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
5065245 |
tgttaagtcatccacaggaaccacttgaggagagacttttctgacaaagcattcattttcttcaccactacaaacaat |
5065322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 5178127 - 5177930
Alignment:
| Q |
38 |
agagacttttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcatgacactcctccactttttcagcaatcagtcca |
137 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| ||||| |||| ||||| | || || | ||||| |||||| |||| || || |
|
|
| T |
5178127 |
agagacttctctgacaaagcattcatcttcatcaccactacacacaatt----tctt--cttgttcttggcattgctccattttttctccaattggttca |
5178034 |
T |
 |
| Q |
138 |
tcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttc--cgttcaatacttgacactactc |
235 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||| | |||| |||||||| ||||||| |
|
|
| T |
5178033 |
tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc |
5177934 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 23127300 - 23127384
Alignment:
| Q |
127 |
caatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtt |
211 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
23127300 |
caattagttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgtt |
23127384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 5279860 - 5279755
Alignment:
| Q |
136 |
catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttc--cgttcaatacttgacactac |
233 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||| | |||| |||||||| ||||| |
|
|
| T |
5279860 |
catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactac |
5279761 |
T |
 |
| Q |
234 |
tctctg |
239 |
Q |
| |
|
|||||| |
|
|
| T |
5279760 |
tctctg |
5279755 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 5346325 - 5346210
Alignment:
| Q |
136 |
catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac |
233 |
Q |
| |
|
|||||||||| ||||||| || |||| ||||||||| |||||||||||||| |||||| |||| ||||||||||| || |||| |||||||| || || |
|
|
| T |
5346325 |
catcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaac |
5346226 |
T |
 |
| Q |
234 |
tctctgctcctcctca |
249 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
5346225 |
tctctggccctcctca |
5346210 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 5178210 - 5178132
Alignment:
| Q |
27 |
gccacttgaggagagacttttctgacaaagcattcattttcatcactactactaacaataccactcttatcttgtgcat |
105 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| || | | ||||||||||| |
|
|
| T |
5178210 |
gccacttgaggagagacatttctgacaacacattcattttcatcaccactactaacaatgacattgtaatcttgtgcat |
5178132 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 5126628 - 5126743
Alignment:
| Q |
136 |
catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac |
233 |
Q |
| |
|
|||||||||| |||||||| | |||| ||||||||| |||||| |||| |||||||||||||| || |||||||| || ||| |||||||| ||||| |
|
|
| T |
5126628 |
catcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactac |
5126727 |
T |
 |
| Q |
234 |
tctctgctcctcctca |
249 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
5126728 |
tctctccccctcctca |
5126743 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 5688902 - 5689007
Alignment:
| Q |
136 |
catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttc--cgttcaatacttgacactac |
233 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| |||||| |||||||||||| ||||| ||||||||||| | |||| |||||||| ||||| |
|
|
| T |
5688902 |
catcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac |
5689001 |
T |
 |
| Q |
234 |
tctctg |
239 |
Q |
| |
|
|||||| |
|
|
| T |
5689002 |
tctctg |
5689007 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 5688716 - 5688769
Alignment:
| Q |
27 |
gccacttgaggagagacttttctgacaaagcattcattttcatcactactacta |
80 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
5688716 |
gccacttgaggagagacatttctgacaacacattcattttcatcaccactacta |
5688769 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 5280040 - 5279988
Alignment:
| Q |
28 |
ccacttgaggagagacttttctgacaaagcattcattttcatcactactacta |
80 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
5280040 |
ccacttgaggagagacatttctgacaacacattcattttcatcaccactacta |
5279988 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 5398341 - 5398286
Alignment:
| Q |
137 |
atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaa |
192 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||| |||| ||||||| ||||||| |
|
|
| T |
5398341 |
atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaa |
5398286 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 5098530 - 5098432
Alignment:
| Q |
113 |
ctccactttttcagcaatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtt |
211 |
Q |
| |
|
||||||||||||| |||| || ||||||||| |||||||||| |||| | ||||||| ||||| ||||| |||||||||| | ||||||||||| |
|
|
| T |
5098530 |
ctccactttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgtt |
5098432 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 5100828 - 5100916
Alignment:
| Q |
147 |
agataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac |
233 |
Q |
| |
|
|||||||||| |||| | ||||||| ||||| ||||||||||||||||| | ||||||||||| || |||| |||||||| ||||| |
|
|
| T |
5100828 |
agataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactac |
5100916 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 5124433 - 5124514
Alignment:
| Q |
127 |
caatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccacttt |
208 |
Q |
| |
|
|||||||| |||||||||||| ||| | ||||||| |||||||| ||| | |||| |||||||| |||||| |||||||| |
|
|
| T |
5124433 |
caatcagttcatcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccacttt |
5124514 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 5135929 - 5136017
Alignment:
| Q |
147 |
agataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac |
233 |
Q |
| |
|
|||||||||| |||| | ||||||| ||||| ||||||||||||||||| | ||||||||||| || |||| |||||||| ||||| |
|
|
| T |
5135929 |
agataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactac |
5136017 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 5242511 - 5242614
Alignment:
| Q |
136 |
catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac |
233 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||||| ||||| ||||||||||||| ||| | ||||||||||| || |||| |||||| | ||||| |
|
|
| T |
5242511 |
catcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactac |
5242610 |
T |
 |
| Q |
234 |
tctc |
237 |
Q |
| |
|
|||| |
|
|
| T |
5242611 |
tctc |
5242614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 5279955 - 5279915
Alignment:
| Q |
38 |
agagacttttctgacaaagcattcattttcatcactactac |
78 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
5279955 |
agagacttctctgacaaagcattcatcttcatcaccactac |
5279915 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 5427196 - 5427081
Alignment:
| Q |
136 |
catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactac |
233 |
Q |
| |
|
||||||||| ||||||||| |||| || |||||||||||| ||||||||||||| ||| | |||| |||||| || |||| |||||||| ||||| |
|
|
| T |
5427196 |
catcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactac |
5427097 |
T |
 |
| Q |
234 |
tctctgctcctcctca |
249 |
Q |
| |
|
||| | | |||||||| |
|
|
| T |
5427096 |
tctttccccctcctca |
5427081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 47985393 - 47985507
Alignment:
| Q |
137 |
atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactact |
234 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| | ||||||||||| || |||| |||||||| |||||| |
|
|
| T |
47985393 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
47985492 |
T |
 |
| Q |
235 |
ctctgctcctcctca |
249 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
47985493 |
ctctccccctcctca |
47985507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 47994680 - 47994794
Alignment:
| Q |
137 |
atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttccg--ttcaatacttgacactact |
234 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| ||| |||||||| |||||| |
|
|
| T |
47994680 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact |
47994779 |
T |
 |
| Q |
235 |
ctctgctcctcctca |
249 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
47994780 |
ctctccccctcctca |
47994794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 48003967 - 48004081
Alignment:
| Q |
137 |
atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttcc--gttcaatacttgacactact |
234 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| | ||||||||||| || |||| |||||||| |||||| |
|
|
| T |
48003967 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact |
48004066 |
T |
 |
| Q |
235 |
ctctgctcctcctca |
249 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
48004067 |
ctctccccctcctca |
48004081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 48013252 - 48013366
Alignment:
| Q |
137 |
atcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttccg--ttcaatacttgacactact |
234 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| ||| |||||||| |||||| |
|
|
| T |
48013252 |
atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact |
48013351 |
T |
 |
| Q |
235 |
ctctgctcctcctca |
249 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
48013352 |
ctctccccctcctca |
48013366 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 4132576 - 4132676
Alignment:
| Q |
95 |
atcttgtgcatgacactcctccactttttcagcaatcagtccatcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaaca |
194 |
Q |
| |
|
||||||||||||||| | | ||| |||||| |||| || |||||||||| |||||||||| |||| || |||||| ||||| ||| ||||||||||| |
|
|
| T |
4132576 |
atcttgtgcatgacattgccccaaattttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaaca |
4132675 |
T |
 |
| Q |
195 |
a |
195 |
Q |
| |
|
| |
|
|
| T |
4132676 |
a |
4132676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 4122643 - 4122717
Alignment:
| Q |
136 |
catcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgt |
210 |
Q |
| |
|
|||||||||| |||||||||| |||| || |||||| ||||| || ||||||||||||||| |||||||||| |
|
|
| T |
4122643 |
catcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgt |
4122717 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 7878 - 7955
Alignment:
| Q |
138 |
tcatatataagataaactgttgtcctcttcacaacgaaaccattctcaaaaacaacaacaaaatccactttgtttccg |
215 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||| |||||| | | ||||||||||||||| ||||||||||||||| |
|
|
| T |
7878 |
tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccg |
7955 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University