View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_83 (Length: 249)

Name: NF1763_high_83
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_83
NF1763_high_83
[»] chr6 (19 HSPs)
chr6 (29-200)||(5101958-5102129)
chr6 (56-200)||(5137037-5137181)
chr6 (14-200)||(5426485-5426671)
chr6 (29-200)||(5350958-5351134)
chr6 (20-166)||(5156879-5157040)
chr6 (193-248)||(5102148-5102203)
chr6 (193-248)||(5137200-5137255)
chr6 (194-245)||(5371096-5371147)
chr6 (211-248)||(5157150-5157187)
chr6 (207-248)||(5350880-5350921)
chr6 (14-88)||(5448277-5448349)
chr6 (29-92)||(5333390-5333449)
chr6 (91-145)||(5448198-5448252)
chr6 (203-246)||(5127931-5127974)
chr6 (203-242)||(5397505-5397544)
chr6 (50-92)||(5283772-5283814)
chr6 (110-176)||(5371188-5371254)
chr6 (95-181)||(5097333-5097425)
chr6 (32-88)||(5371321-5371377)
[»] chr4 (1 HSPs)
chr4 (50-89)||(48847401-48847440)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 5101958 - 5102129
Alignment:
Q  29 cacatgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagacaattttcattattttgattattaagtattttacacctatat 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5101958 cacatgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagacaattttcattattttgatttttaagtattttacacctatat 5102057  T
Q  129 caaataattgtatacacttacatgtgttgttatagactaatacactaaagaatataaatgttggaggggata 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5102058 caaataattgtatacacttacatgtgttgttatagacttatacactaaagaatataaatgttggaggggata 5102129  T

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Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 5137037 - 5137181
Alignment:
Q  56 ctgatagcaaactttgtgaaaatttggaagacaattttcattattttgattattaagtattttacacctatatcaaataattgtatacacttacatgtgt 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5137037 ctgatagcaaactttgtgaaaatttggaagacaattttcattattttgattattaagtattttacacctatatcaaataattgtatacacttacatgtgt 5137136  T
Q  156 tgttatagactaatacactaaagaatataaatgttggaggggata 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  5137137 tgttatagacttatacactaaagaatataaatgttggaggggata 5137181  T

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Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 5426671 - 5426485
Alignment:
Q  14 agactataattcttccacatgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagacaattttcattattttgattattaagt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5426671 agactatgattcttccacatgtgtcaagtaagctgtcaatgaataatagcaaactttgtgaaaatttggaagacaattttcattattttgatttttaagt 5426572  T
Q  114 attttacacctatatcaaataattgtatacacttacatgtgttgttatagactaatacactaaagaatataaatgttggaggggata 200  Q
    ||||||  ||||| ||||| ||||||||||| ||||||||| ||||||||||| ||| |||||| |||  ||||||| ||| |||||    
T  5426571 attttatgcctatgtcaaagaattgtatacaattacatgtgctgttatagacttataaactaaaaaattcaaatgtttgagtggata 5426485  T

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Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 5351134 - 5350958
Alignment:
Q  29 cacatgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagacaattttcattattttgattattaagtattttacacctatat 128  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||  |||    
T  5351134 cacatgtttcaagtaagctgtcaattactgatagcaaactttgtgaaaatttggaagacaattttcattattttgattttgaagtattttataccggtat 5351035  T
Q  129 c-----aaataattgtatacacttacatgtgttgttatagactaatacactaaagaatataaatgttggaggggata 200  Q
    |     ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||  ||||||| ||| |||||    
T  5351034 caaattaaataattgtatacacttacatgtgctgttatagacttataaactaaagaattcaaatgtttgagcggata 5350958  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 5156879 - 5157040
Alignment:
Q  20 taattcttccacatgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagacaat-----------------tttcattatttt 102  Q
    |||||||||||||||||| ||||||| | |||||||||||||||||||||  |||||||||||||||||||                 ||||| ||||||    
T  5156879 taattcttccacatgtgtaaagtaagttatcaatgactgatagcaaactt--tgaaaatttggaagacaatttacacatatgttaggatttcagtatttt 5156976  T
Q  103 gattattaagtattttacacctatatcaaataattgtatacacttacatgtgttgttatagact 166  Q
    |||| ||||||||||||||||||||||||||||||||| ||| ||| |||| || |||||||||    
T  5156977 gatttttaagtattttacacctatatcaaataattgtacacatttaaatgtattattatagact 5157040  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 5102148 - 5102203
Alignment:
Q  193 aggggatagcgagtatgtcaaacctgtaaaattatatctttcagaatattagtggc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5102148 aggggatagcgagtatgtcaaacctgtaaaattatatctttcagaatattagtggc 5102203  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 5137200 - 5137255
Alignment:
Q  193 aggggatagcgagtatgtcaaacctgtaaaattatatctttcagaatattagtggc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5137200 aggggatagcgagtatgtcaaacctgtaaaattatatctttcagaatattagtggc 5137255  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 5371147 - 5371096
Alignment:
Q  194 ggggatagcgagtatgtcaaacctgtaaaattatatctttcagaatattagt 245  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||    
T  5371147 ggggagagagagtatgtcaaacctgtaaaattatctctttcagaatattagt 5371096  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 5157150 - 5157187
Alignment:
Q  211 caaacctgtaaaattatatctttcagaatattagtggc 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5157150 caaacctgtaaaattatatctttcagaatattagtggc 5157187  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 5350921 - 5350880
Alignment:
Q  207 atgtcaaacctgtaaaattatatctttcagaatattagtggc 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  5350921 atgtcaaacctgtaaaattatctctttcagaatattagtggc 5350880  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 5448349 - 5448277
Alignment:
Q  14 agactataattcttccacatgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagaca 88  Q
    |||||||||||||||||  ||||||||||||||||||| ||| ||||| |||| ||||||  |||||||| ||||    
T  5448349 agactataattcttcca--tgtgtcaagtaagctgtcagtgattgatatcaaaatttgtgcgaatttggacgaca 5448277  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 5333449 - 5333390
Alignment:
Q  29 cacatgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagacaattt 92  Q
    ||||||||| ||||||| |||||||||||||||||||||    ||| |||||||||||||||||    
T  5333449 cacatgtgtaaagtaagttgtcaatgactgatagcaaac----tgagaatttggaagacaattt 5333390  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 5448252 - 5448198
Alignment:
Q  91 tttcattattttgattattaagtattttacacctatatcaaataattgtatacac 145  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||  |||||||    
T  5448252 tttcattattttgatttttaagtattttatacctatagcaaataatcctatacac 5448198  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 5127931 - 5127974
Alignment:
Q  203 gagtatgtcaaacctgtaaaattatatctttcagaatattagtg 246  Q
    |||||||||||||||||||||| ||  |||||||||||||||||    
T  5127931 gagtatgtcaaacctgtaaaataatccctttcagaatattagtg 5127974  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 5397544 - 5397505
Alignment:
Q  203 gagtatgtcaaacctgtaaaattatatctttcagaatatt 242  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  5397544 gagtatgccaaacctgtaaaattatctctttcagaatatt 5397505  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 5283772 - 5283814
Alignment:
Q  50 caatgactgatagcaaactttgtgaaaatttggaagacaattt 92  Q
    |||||||||||| |||| ||||||| |||||||||||||||||    
T  5283772 caatgactgataacaaaatttgtgagaatttggaagacaattt 5283814  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 5371254 - 5371188
Alignment:
Q  110 aagtattttacacctatatcaaataattgtatacacttacatgtgttgttatagactaatacactaa 176  Q
    |||||||||| ||||||| ||||||||  |||||||||||| || ||| || ||||| |||||||||    
T  5371254 aagtattttatacctatagcaaataatcatatacacttacaagtattggtagagacttatacactaa 5371188  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 5097425 - 5097333
Alignment:
Q  95 attattttgattattaagtattttacacctatatcaaataattgtatacact------tacatgtgttgttatagactaatacactaaagaat 181  Q
    |||||||| ||| | ||||||||||||| |||| |||||||||| |||||||      ||||||| |||||||||||  ||||||| ||||||    
T  5097425 attattttaattttcaagtattttacacatatagcaaataattgaatacacttgcatatacatgtattgttatagacatatacacttaagaat 5097333  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 5371377 - 5371321
Alignment:
Q  32 atgtgtcaagtaagctgtcaatgactgatagcaaactttgtgaaaatttggaagaca 88  Q
    ||||||| |||||||||||||||  ||||||||||   ||||| |||||||||||||    
T  5371377 atgtgtccagtaagctgtcaatgtttgatagcaaaaagtgtgagaatttggaagaca 5371321  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 48847401 - 48847440
Alignment:
Q  50 caatgactgatagcaaactttgtgaaaatttggaagacaa 89  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  48847401 caatgactgatagcaaaatttgtgagaatttggaagacaa 48847440  T

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