View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_88 (Length: 241)
Name: NF1763_high_88
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_88 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 45394176 - 45394387
Alignment:
| Q |
19 |
cctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcac |
118 |
Q |
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| T |
45394176 |
cctttgatgtagctattgaggacaacgttagtgtcgggttgcccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcac |
45394275 |
T |
|
| Q |
119 |
ataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45394276 |
ataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaat |
45394375 |
T |
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| Q |
219 |
cttctggcgccc |
230 |
Q |
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|||||||||||| |
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| T |
45394376 |
cttctggcgccc |
45394387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 52740787 - 52740991
Alignment:
| Q |
19 |
cctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcac |
118 |
Q |
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|||||||||||||| ||||||||| || ||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52740787 |
cctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcac |
52740886 |
T |
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| Q |
119 |
ataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaat |
218 |
Q |
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| T |
52740887 |
ataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaat |
52740986 |
T |
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| Q |
219 |
cttct |
223 |
Q |
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||||| |
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| T |
52740987 |
cttct |
52740991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 13539456 - 13539603
Alignment:
| Q |
85 |
ggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtt |
184 |
Q |
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||||||||||| | |||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||| || |
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| T |
13539456 |
ggggaaaacaccaccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtc |
13539555 |
T |
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| Q |
185 |
tgttggaatctttctcaaccttcttgatctcaatcttctggcgcccta |
232 |
Q |
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| T |
13539556 |
tgttcgatgctttgtcaatcttcttgatctcgatcttcttgtgcccta |
13539603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 35782138 - 35781972
Alignment:
| Q |
55 |
ggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaac |
154 |
Q |
| |
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|||| ||| ||||||| |||||| || |||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||||| |||||||| |
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| T |
35782138 |
ggttcaccgaaacagtgtagtttgccagcaggagaaaacacgatgatggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaac |
35782039 |
T |
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| Q |
155 |
cttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttgatctcaatctt |
221 |
Q |
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||||||||||||||||||||||||| | ||||||| ||||| |||| ||| |||||||||||||| |
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| T |
35782038 |
cttgtcttctttttgagaaagtgacttgcttgttggtttctttttcaagctttttgatctcaatctt |
35781972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 9668432 - 9668579
Alignment:
| Q |
85 |
ggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtt |
184 |
Q |
| |
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||||||||||| | |||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||| || |
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| T |
9668432 |
ggggaaaacaccaccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtc |
9668531 |
T |
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| Q |
185 |
tgttggaatctttctcaaccttcttgatctcaatcttctggcgcccta |
232 |
Q |
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|||| || |||| |||| |||||||||||| ||||||| | |||||| |
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| T |
9668532 |
tgttcgatgctttgtcaatcttcttgatctcgatcttcttgtgcccta |
9668579 |
T |
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