View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_89 (Length: 238)
Name: NF1763_high_89
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_89 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 48819379 - 48819159
Alignment:
| Q |
17 |
aatattaagtatgaaatagaatgttgcaaaggttagtgcgattacaaaatattactcgagaaccaaattacaaattgtgtgcaggttctaaaaagaaagt |
116 |
Q |
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| T |
48819379 |
aatattaagtatgaaatagcatgttgcgaag-ttagtgcgattacaaaatattactcgagaaccaaattacaaattgtgtgcaggttctaaaaagaaagt |
48819281 |
T |
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| Q |
117 |
gggtcaagtatgtttattgtttaatttagggtggcgaaacctgtttcatatacatatggttcattcatacttggttctgtcctttgtacccttaataatt |
216 |
Q |
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| T |
48819280 |
gggtcaagtatgtttattgtttaatttagggtggcgaaacctgtttcatatacatatggttcatgcatacttggttctgtcctttgtacccttaataatt |
48819181 |
T |
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| Q |
217 |
ttgcccaaagaaaattttacaa |
238 |
Q |
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| T |
48819180 |
ttgcccaaagaaaattttacaa |
48819159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 30725294 - 30725460
Alignment:
| Q |
17 |
aatattaagtatgaaatagaatgttgcaaaggttagtgcgattacaaaatattactcgagaaccaaattacaaattgtgtgcaggttctaaaaagaaagt |
116 |
Q |
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||||||||| ||||||||| || |||||||||||| |||||||||||||||||| | |||||| || |||||||||||||||||| ||||||||||| |
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| T |
30725294 |
aatattaaggatgaaatagcttgctgcaaaggttaggacgattacaaaatattacttgtgaaccacatagcaaattgtgtgcaggttcgaaaaagaaagt |
30725393 |
T |
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| Q |
117 |
ggg----tcaagtatgtttattgtttaatttagggtggcgaaacctgtttcatatacatatggttca |
179 |
Q |
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| T |
30725394 |
gtgctttttttgcatggttcttaattattttagggtggtgaaacctgtttcatatatatatggttca |
30725460 |
T |
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