View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_9 (Length: 603)
Name: NF1763_high_9
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 103 - 586
Target Start/End: Original strand, 50387304 - 50387788
Alignment:
| Q |
103 |
ataatatctggacaaacttaattaaatgatcgacaatgtgaagtcatatacatcaagacaacacaaagataatgtattagaaaggaaaagaaaatatatc |
202 |
Q |
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| T |
50387304 |
ataatatctggacaaacttaattaaatgatcgacaatgtgaagtcatatacatcaagacaacacaaagataatgtattagaaaggaaaagaaaatatatc |
50387403 |
T |
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| Q |
203 |
agttggatttgctgagattcacctattgtgtatacctataaagataaagctggtgattcggctcaggtatctctaaaatgcagggacggcaataattcca |
302 |
Q |
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| T |
50387404 |
agttggatttgctgagattcacctattgtgtatacctataaagataaagctggtgattcggctcaggtatctctaaaatgcagggacggcaataattcca |
50387503 |
T |
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| Q |
303 |
caatggtatcgtacacattgtggcatactggcatcatgcatgccaggagaaatttataacctacttccgtatacaattaactttttctaaactaaacatt |
402 |
Q |
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| T |
50387504 |
caatggtatcgtacacattgtggcatactggcatcatgcatgccaggagaaatttataacctacttccgtatacaattaactttttctaaactaaacatt |
50387603 |
T |
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| Q |
403 |
tgggtttaatacagtaacgttatatacatatattataagtctcttt-nnnnnnnnncatatattataagtcgacaaaaagcactcgctagctagtatacg |
501 |
Q |
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| T |
50387604 |
taggtttaatacagtaacgttatatacatatattataagtctctttaaaaaaaaaacatatattataagtcgacaaaaagcactcgctagctagtatact |
50387703 |
T |
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| Q |
502 |
tcgagctatatatgctaaattatacgaatcttaatgagatgatgcatatgctcattcccctttttgttatcccataagatgcatg |
586 |
Q |
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| T |
50387704 |
tcgagctatatatgctaaattatacgaatcttaatgagatgatgcatatgctcattcccctttttgttatcccataagatgcatg |
50387788 |
T |
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