View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_97 (Length: 233)

Name: NF1763_high_97
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_97
NF1763_high_97
[»] chr5 (2 HSPs)
chr5 (1-67)||(33252821-33252887)
chr5 (92-220)||(33254184-33254312)
[»] chr4 (1 HSPs)
chr4 (102-194)||(1125912-1126004)
[»] chr3 (1 HSPs)
chr3 (101-194)||(52500862-52500955)
[»] chr2 (1 HSPs)
chr2 (101-174)||(45201903-45201976)
[»] chr6 (1 HSPs)
chr6 (150-194)||(10999419-10999463)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33252821 - 33252887
Alignment:
Q  1 tttgtcatctgtctgtagtatatgaatttaaacaaaaatttatcatagttattgtatataaaagaac 67  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  33252821 tttgtcatctttctgtagtatatgaatttaaacaaaaatttatcatatttattgtatctaaaagaac 33252887  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 33254184 - 33254312
Alignment:
Q  92 cacaactaacaaatgttgaaattgtaaggtcggatgtcgtaatccgagtttaaactcgaaatctcacatttgtatatgagtttaatttcagtagattaac 191  Q
    ||||||||| |||||| ||||||||||| |||||  ||||||  ||||||| |||||  ||||||||| || | ||||||||||||||||||| ||||||    
T  33254184 cacaactaataaatgtcgaaattgtaagatcggacatcgtaactcgagtttgaactcagaatctcacagttatgtatgagtttaatttcagtaaattaac 33254283  T
Q  192 actnnnnnnntcaaatggataaacacaat 220  Q
    |||       |||||||||||||||||||    
T  33254284 actgaaaaaatcaaatggataaacacaat 33254312  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 1125912 - 1126004
Alignment:
Q  102 aaatgttgaaattgtaaggtcggatgtcgtaatccgagtttaaactcgaaatctcacatttgtatatgagtttaatttcagtagattaacact 194  Q
    |||||| ||||||||||| ||||||||||| ||  || ||| ||| | | |||||||| |||| |||||||||||||||| || |||| ||||    
T  1125912 aaatgtcgaaattgtaagatcggatgtcgtgatttgaatttgaacccaagatctcacagttgtgtatgagtttaatttcaataaattaccact 1126004  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 194
Target Start/End: Original strand, 52500862 - 52500955
Alignment:
Q  101 caaatgttgaaattgtaaggtcggatgtcgtaatccgagtttaaactcgaaatctcacatttgtatatgagtttaatttcagtagattaacact 194  Q
    ||||||| |||||||||||| |||| ||| | ||||| |||  |||  |||| |||||| |||| | |||||||| ||||||||||||| ||||    
T  52500862 caaatgtcgaaattgtaaggccggacgtcatgatccgggttcgaacctgaaacctcacagttgtgtgtgagtttattttcagtagattaccact 52500955  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 45201976 - 45201903
Alignment:
Q  101 caaatgttgaaattgtaaggtcggatgtcgtaatccgagtttaaactcgaaatctcacatttgtatatgagttt 174  Q
    ||||||| ||||||||||||||||  ||||| |||||||||  |||||| || |||||| |||| | |||||||    
T  45201976 caaatgtcgaaattgtaaggtcggtcgtcgtgatccgagttcgaactcggaacctcacagttgtgtgtgagttt 45201903  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 10999463 - 10999419
Alignment:
Q  150 aaatctcacatttgtatatgagtttaatttcagtagattaacact 194  Q
    |||||||||| |||||| |||||||||||||||| ||||| ||||    
T  10999463 aaatctcacagttgtatgtgagtttaatttcagtggattaccact 10999419  T

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