View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_low_100 (Length: 236)
Name: NF1763_low_100
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_100 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 50386771 - 50386550
Alignment:
| Q |
1 |
catgaattccataaagaaaaagaaacccaaa-tgtactgttgttacacattgagtcaaacattctcaaacaagg-acatattttgtcctttgcatgattt |
98 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50386771 |
catgaagtccataaagaaaaagaaacccaaaatgtactgttgttacacattgagtcaaacattctcaaacaagggacatattttgtcctttgcatgattt |
50386672 |
T |
|
| Q |
99 |
aatgtcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50386671 |
aatgtcgcatgaagaaacctaagtggttgaaataattttgttttaacttgaaggttattgtcacaagcttcacaagtattccataaactgaaaatgatcc |
50386572 |
T |
|
| Q |
199 |
atgatgagcttgttgtactttt |
220 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50386571 |
atgatgagcttgttgtactttt |
50386550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University