View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_11 (Length: 601)

Name: NF1763_low_11
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_11
NF1763_low_11
[»] chr8 (4 HSPs)
chr8 (1-520)||(294539-295058)
chr8 (495-547)||(32691744-32691796)
chr8 (496-552)||(15140373-15140429)
chr8 (496-540)||(31681837-31681881)
[»] chr5 (2 HSPs)
chr5 (496-591)||(27239502-27239597)
chr5 (506-542)||(41755329-41755365)
[»] chr7 (10 HSPs)
chr7 (78-247)||(27490712-27490881)
chr7 (496-541)||(43160491-43160536)
chr7 (493-541)||(650526-650574)
chr7 (495-581)||(37610055-37610139)
chr7 (497-539)||(10893877-10893919)
chr7 (496-542)||(23720467-23720512)
chr7 (497-542)||(21238823-21238868)
chr7 (497-549)||(10893355-10893407)
chr7 (499-543)||(18750881-18750925)
chr7 (495-547)||(37775983-37776035)
[»] chr4 (6 HSPs)
chr4 (501-552)||(10164459-10164510)
chr4 (493-545)||(45615419-45615471)
chr4 (559-591)||(12441838-12441870)
chr4 (494-530)||(22596985-22597021)
chr4 (494-530)||(31714358-31714394)
chr4 (494-530)||(31720202-31720238)
[»] chr1 (2 HSPs)
chr1 (495-551)||(18556032-18556088)
chr1 (496-552)||(31667421-31667477)
[»] chr6 (4 HSPs)
chr6 (495-530)||(18803265-18803300)
chr6 (496-542)||(29449687-29449733)
chr6 (495-547)||(30537501-30537553)
chr6 (496-540)||(34057962-34058006)
[»] chr3 (1 HSPs)
chr3 (496-547)||(1502575-1502626)


Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 295058 - 294539
Alignment:
Q  1 actacttcagtttcaagaattatcagacatgcagagatgggagtttcttctttttggtggactcatatggatatacttaactgcaagaccaggtgttctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  295058 actacttcagtttcaagaattatcagacatgcagagatgggagtttcttctttttggtggactcatatggatatacttaactgcaagaccaggtgttctt 294959  T
Q  101 attggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaagactggtgattttcttgttggag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  294958 attggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaacttgaagactggtgattttcttgttggag 294859  T
Q  201 ataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggaaaagagaggaagatccaaggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  294858 ataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgaggaggacaagagaggaagatccaaggc 294759  T
Q  301 aacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaacccctttcttgttgtctaaataaaattgaattttagtata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  294758 aacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaaccccttacttgttgtctaaataaaattgaattttagtata 294659  T
Q  401 aggtaggattctgcaatgtgaatgctcagagcaaccaaaacaggctatagcacagaccgacacctcggattgaagatgtgtccgcggcttggcatgacac 500  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  294658 aggtaggattctgcaatgtgaatgctcagagcaaccaaaataggctatagcacagactgacacctcggattgaagatgtgtccgcggcttggcatgacac 294559  T
Q  501 atgtgattacattcaattat 520  Q
    ||||||||||||||||||||    
T  294558 atgtgattacattcaattat 294539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 32691796 - 32691744
Alignment:
Q  495 tgacacatgtgattacattcaattatgcaattttcttacattactaccggtgt 547  Q
    |||||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  32691796 tgacacatgtgattacattcaattatgtcattttcttaaattactaccggtgt 32691744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 552
Target Start/End: Original strand, 15140373 - 15140429
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgaca 552  Q
    ||||| |||| |||||||||||||| ||| ||||| | |||||||||||||||||||    
T  15140373 gacacgtgtggttacattcaattattcaaatttctcaaattactaccggtgttgaca 15140429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 31681837 - 31681881
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattacta 540  Q
    ||||||||||||| ||||||||||||  ||||||||| |||||||    
T  31681837 gacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 496 - 591
Target Start/End: Complemental strand, 27239597 - 27239502
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgacacgtgttagtgttgtgtctttgtctgtgtcagtgcttcat 591  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27239597 gacacatgtgattacattcaattatgcaattttcttacgttactataggtgttgacacatgttagtgttgtgtctttgtctgtgtcagtgcttcat 27239502  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 542
Target Start/End: Complemental strand, 41755365 - 41755329
Alignment:
Q  506 attacattcaattatgcaattttcttacattactacc 542  Q
    ||||||||||||||||  |||||||||||||||||||    
T  41755365 attacattcaattatgtcattttcttacattactacc 41755329  T

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Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 27490712 - 27490881
Alignment:
Q  78 taactgcaagaccaggtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaa 177  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||  | ||| ||| ||| || | | ||||||||||||||||||||||    
T  27490712 taactgcaagaccaggtgttcttattggtgctattgatgcataccttttggctccaatgcaatttgttttggatagtttatctggaaggagaaatttgaa 27490811  T
Q  178 gactggtgattttcttg-ttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttg 247  Q
    ||   |||| ||||||| |||| | ||| || || |||||||||||||||||||||||||||| |||||||    
T  27490812 gaggagtga-tttcttgattggtggtaagataggagaagggtcatttggtgttgtttattctgctgttttg 27490881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 43160536 - 43160491
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattactac 541  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||    
T  43160536 gacacatgtgattacattcaattatgttattttcttaaattactac 43160491  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 650574 - 650526
Alignment:
Q  493 catgacacatgtgattacattcaattatgcaattttcttacattactac 541  Q
    |||||||||||||||| ||||||||||||  ||||||||| ||||||||    
T  650574 catgacacatgtgattgcattcaattatgtcattttcttaaattactac 650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 581
Target Start/End: Original strand, 37610055 - 37610139
Alignment:
Q  495 tgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgacacgtgttagtgttgtgtctttgtctgtgtc 581  Q
    ||||||||||||||||||||| |||||  |||||| ||  |||||||||||||  |||  |||||||||||||| | ||| ||||||    
T  37610055 tgacacatgtgattacattcagttatgtcattttcatatgttactaccggtgtcaaca--tgttagtgttgtgtttgtgtttgtgtc 37610139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 539
Target Start/End: Original strand, 10893877 - 10893919
Alignment:
Q  497 acacatgtgattacattcaattatgcaattttcttacattact 539  Q
    |||||||||||||||||||||||||  ||||||||| ||||||    
T  10893877 acacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 23720512 - 23720467
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattactacc 542  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||    
T  23720512 gacacatgtgattacattcaattatg-atttttcttaaattactacc 23720467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 21238868 - 21238823
Alignment:
Q  497 acacatgtgattacattcaattatgcaattttcttacattactacc 542  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||    
T  21238868 acacatgtgattacattcaattttgacattttcttaaattactacc 21238823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 549
Target Start/End: Original strand, 10893355 - 10893407
Alignment:
Q  497 acacatgtgattacattcaattatgcaattttcttacattactaccggtgttg 549  Q
    ||||||| |||||||||||||||||  ||||||| | |||||| |||||||||    
T  10893355 acacatgcgattacattcaattatgtcattttctcaaattactgccggtgttg 10893407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 543
Target Start/End: Complemental strand, 18750925 - 18750881
Alignment:
Q  499 acatgtgattacattcaattatgcaattttcttacattactaccg 543  Q
    |||||||||||||||||||||||  ||||||||| |||| |||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaattattaccg 18750881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 37776035 - 37775983
Alignment:
Q  495 tgacacatgtgattacattcaattatgcaattttcttacattactaccggtgt 547  Q
    ||||||||||||||||||| |||||||  ||||||| | |||||||| |||||    
T  37776035 tgacacatgtgattacatttaattatgtcattttctcaaattactactggtgt 37775983  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 10164510 - 10164459
Alignment:
Q  501 atgtgattacattcaattatgcaattttcttacattactaccggtgttgaca 552  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgaca 10164459  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 493 - 545
Target Start/End: Original strand, 45615419 - 45615471
Alignment:
Q  493 catgacacatgtgattacattcaattatgcaattttcttacattactaccggt 545  Q
    |||||||||||||||||| ||||||||||  ||||||||| ||||||||||||    
T  45615419 catgacacatgtgattacgttcaattatgtcattttcttaaattactaccggt 45615471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 559 - 591
Target Start/End: Original strand, 12441838 - 12441870
Alignment:
Q  559 agtgttgtgtctttgtctgtgtcagtgcttcat 591  Q
    |||||||||||| ||||||||||||||||||||    
T  12441838 agtgttgtgtctgtgtctgtgtcagtgcttcat 12441870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 22596985 - 22597021
Alignment:
Q  494 atgacacatgtgattacattcaattatgcaattttct 530  Q
    ||||||||||||||||| || ||||||||||||||||    
T  22596985 atgacacatgtgattacgttgaattatgcaattttct 22597021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 31714358 - 31714394
Alignment:
Q  494 atgacacatgtgattacattcaattatgcaattttct 530  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  31714358 atgacaaatgtgattacattcaattatgtaattttct 31714394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 31720202 - 31720238
Alignment:
Q  494 atgacacatgtgattacattcaattatgcaattttct 530  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  31720202 atgacaaatgtgattacattcaattatgtaattttct 31720238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 551
Target Start/End: Original strand, 18556032 - 18556088
Alignment:
Q  495 tgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgac 551  Q
    ||||||||||||||||| |||||||||  ||||| ||| |||| |||||||||||||    
T  18556032 tgacacatgtgattacagtcaattatgtcattttattaaattattaccggtgttgac 18556088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 31667477 - 31667421
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgaca 552  Q
    |||||||||||||||||| |||||||  ||||||| | |||| |||| |||||||||    
T  31667477 gacacatgtgattacatttaattatgtcattttctaaaattattaccagtgttgaca 31667421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 530
Target Start/End: Complemental strand, 18803300 - 18803265
Alignment:
Q  495 tgacacatgtgattacattcaattatgcaattttct 530  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18803300 tgacacatgtgattacattcaattatgtaattttct 18803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 29449733 - 29449687
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattactacc 542  Q
    ||||||||||||||||||||||||||  ||||||| | |||||||||    
T  29449733 gacacatgtgattacattcaattatgttattttctgaaattactacc 29449687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 30537553 - 30537501
Alignment:
Q  495 tgacacatgtgattacattcaattatgcaattttcttacattactaccggtgt 547  Q
    |||||||| |||| |||||||||||||  ||||||||| ||||||| ||||||    
T  30537553 tgacacatctgataacattcaattatgttattttcttaaattactaacggtgt 30537501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 34058006 - 34057962
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattacta 540  Q
    |||||||||||||||| |||||||||  ||||||||| |||||||    
T  34058006 gacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 1502626 - 1502575
Alignment:
Q  496 gacacatgtgattacattcaattatgcaattttcttacattactaccggtgt 547  Q
    ||||||||||||||||||||||||||  ||||||||| |||| |||| ||||    
T  1502626 gacacatgtgattacattcaattatgtcattttcttagattattaccagtgt 1502575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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