View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_114 (Length: 220)

Name: NF1763_low_114
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_114
NF1763_low_114
[»] chr3 (6 HSPs)
chr3 (22-109)||(25361444-25361531)
chr3 (158-220)||(25361580-25361642)
chr3 (22-106)||(25349568-25349651)
chr3 (30-106)||(25356783-25356859)
chr3 (22-106)||(25352106-25352190)
chr3 (158-206)||(25356914-25356962)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 25361444 - 25361531
Alignment:
Q  22 taatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtccttac 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  25361444 taatcacgattggactgcttgcatctctcccaggaccatcatatgatcttttgaaggtcaaggttctcaatctatcactagtccttac 25361531  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 25361580 - 25361642
Alignment:
Q  158 ctacaatatccaatagagatgttacataaagtctattattgagtaactacgaattgaaataaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25361580 ctacaatatccaatagagatgttacataaagtctattattgagtaactacgaattgaaataaa 25361642  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 25349568 - 25349651
Alignment:
Q  22 taatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtcct 106  Q
    ||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  25349568 taatcacaattggactagttgcatctctcccag-accatcatatacttttttgaaggccaaggttctcaatctattactagtcct 25349651  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 25356783 - 25356859
Alignment:
Q  30 attggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtcct 106  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  25356783 attggactggctgcatctttcccaggaccatcatatacttttttgaaggccaaggttctcaatctattactagtcct 25356859  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 25352106 - 25352190
Alignment:
Q  22 taatcacgattggactggttgcatctctcccaggaccatcatatactcttttgaaggtcaaggttctcaatctatcactagtcct 106  Q
    ||||||| ||||| | |||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||    
T  25352106 taatcacaattgggcaggttgcatctcttccaggaccattatatacttttttgaaggccaaggttctcaatctattactagtcct 25352190  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 25356914 - 25356962
Alignment:
Q  158 ctacaatatccaatagagatgttacataaagtctattattgagtaacta 206  Q
    |||||| |||||| |||| |||||||||||||| |||||| ||||||||    
T  25356914 ctacaacatccaagagaggtgttacataaagtccattattaagtaacta 25356962  T

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