View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_117 (Length: 217)

Name: NF1763_low_117
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_117
NF1763_low_117
[»] chr5 (7 HSPs)
chr5 (11-217)||(39857576-39857782)
chr5 (15-214)||(39847746-39847944)
chr5 (18-204)||(39911132-39911319)
chr5 (18-216)||(39864767-39864975)
chr5 (25-171)||(37466212-37466359)
chr5 (18-129)||(39735942-39736054)
chr5 (15-127)||(39898450-39898565)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 39857782 - 39857576
Alignment:
Q  11 atgagctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttttgacaaactacattattatatagga 110  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39857782 atgagctggtgacgtttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttttgacaaacttcattattatatagga 39857683  T
Q  111 tttatgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactgaatcatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39857682 tttatgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactggatcatt 39857583  T
Q  211 tcttgtt 217  Q
    |||||||    
T  39857582 tcttgtt 39857576  T

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Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 39847944 - 39847746
Alignment:
Q  15 gctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttttgacaaactacattattatataggattta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  39847944 gctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttt-gacaaacttcattattatataggattta 39847846  T
Q  115 tgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactgaatcatttctt 214  Q
    || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||||||||  || ||||| |||||||||| |||||||    
T  39847845 tgtcccattgcaccaccctatatcggagaggatgatatattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttctt 39847746  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 39911319 - 39911132
Alignment:
Q  18 ggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaaca--gtcctttttgacaaactacattattatataggatttat 115  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||  ||||| || |||||||||||||||||| |||||||||     
T  39911319 ggtaacgtttatattatgaatttgtatactattttgatagcatgaaacatcattcaagcatagtcctgtt-gacaaactacattattatttaggatttac 39911221  T
Q  116 gccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactga 204  Q
    ||||||||||||||||| | ||  || ||||||||||||||||||| ||||||||| |  |||||||||| | | ||||| ||||||||    
T  39911220 gccccattgcaccactcaagaagagaaaggatgatatattactttttttcaagttatatgatcctgaaagaatggagctacggtactga 39911132  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 39864975 - 39864767
Alignment:
Q  18 ggtaacatttatattatgaagttgtatactat--tttgatagcatgaaacatcattcaa--acagtccttt------ttgacaaactacattattatata 107  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||  | | |||| |      |||||||||| ||||||||||||    
T  39864975 ggtaacatttatattatgaagttgtatactatattttgatagcacgaaacaccattcaagtaaaatcctatatatgattgacaaactgcattattatata 39864876  T
Q  108 ggatttatgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactgaatc 207  Q
    |||||| || ||||||| ||| ||| |||| | | |||||||||| |||||||| ||||||||| |  |||||||||   || ||||| ||||||||||     
T  39864875 ggatttgtgtcccattgaacctctccataaggtaaaggatgatatgttactttttttcaagttatatgatcctgaaaaagaggagctacggtactgaata 39864776  T
Q  208 atttcttgt 216  Q
    |||| ||||    
T  39864775 atttattgt 39864767  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 37466359 - 37466212
Alignment:
Q  25 tttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagt-cctttttgacaaactacattattatataggatttatgccccatt 123  Q
    |||||||||||||| ||||||||||||| |||  ||||||||| || | ||||   || | |||||||||||| ||||| | ||||||||||| ||||||    
T  37466359 tttatattatgaagctgtatactatttttatataatgaaacattatccgaacacagccctgttgacaaactacgttattgtttaggatttatgtcccatt 37466260  T
Q  124 gcaccactctataacggagaggatgatatattacttttcttcaagtta 171  Q
    |||||||   | ||   | ||||||||||||||||||| |||||||||    
T  37466259 gcaccacctgagaagacaaaggatgatatattactttttttcaagtta 37466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 39735942 - 39736054
Alignment:
Q  18 ggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaa--acagtcctttttgacaaactacattattatataggatttat 115  Q
    ||||||||||| ||| ||||||||||| ||||||| ||   ||  ||||||||||||  | ||||| | |||||||||||| ||||||| |||||||||     
T  39735942 ggtaacatttaaattgtgaagttgtatgctattttaatgttatataacatcattcaagcatagtcc-tgttgacaaactacgttattatttaggatttac 39736040  T
Q  116 gccccattgcacca 129  Q
    ||||||| ||||||    
T  39736041 gccccatggcacca 39736054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 39898565 - 39898450
Alignment:
Q  15 gctggtaacatttatattatgaagttgtatactattttgatagc--atgaaacatcattcaaac--agtcctttttgacaaactacattattatatagga 110  Q
    |||||||||||||  ||||||||||||||||||||||  |||||  || |||||||| |||| |  ||| | | |||||||| ||||||||||| |||||    
T  39898565 gctggtaacatttgcattatgaagttgtatactatttcaatagcatataaaacatcaatcaagcgtagt-catattgacaaagtacattattatttagga 39898467  T
Q  111 tttatgccccattgcac 127  Q
    |||| | ||||||||||    
T  39898466 tttacgtcccattgcac 39898450  T

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