View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_12 (Length: 569)

Name: NF1763_low_12
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_12
NF1763_low_12
[»] chr7 (3 HSPs)
chr7 (261-557)||(25718592-25718888)
chr7 (18-161)||(25719987-25720130)
chr7 (158-187)||(25718961-25718990)
[»] chr1 (4 HSPs)
chr1 (261-557)||(29685609-29685905)
chr1 (18-187)||(29685956-29686125)
chr1 (262-397)||(40598335-40598470)
chr1 (412-478)||(40597802-40597869)
[»] chr4 (2 HSPs)
chr4 (19-156)||(2078619-2078756)
chr4 (27-132)||(47414630-47414735)
[»] chr2 (1 HSPs)
chr2 (25-145)||(44877818-44877938)
[»] chr5 (1 HSPs)
chr5 (358-406)||(9122450-9122498)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 261 - 557
Target Start/End: Complemental strand, 25718888 - 25718592
Alignment:
Q  261 gaaagcagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttag 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25718888 gaaagcagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttag 25718789  T
Q  361 atttgaatatcaacaatcaacaatagcaaacaaattaacagaaacagaattttatatcagccagaattttcttatgagcagcttaacaacagaaacagaa 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25718788 atttgaatatcaacaatcaacaatagcaaacaaattaacagaaacagaattttatatcagccagaattttcttatgagcagcttaacaacagaaacagaa 25718689  T
Q  461 tcacctttcaaaagtttaattaaaatatgatatagctctattatttaatctgtgagatgaagtaagtatcttgacatcagacaaagtttgagatatt 557  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25718688 tcacccttcaaaattttaattaaaatatgatatagctctattatttaatttgtgagatgaagtaagtatcttgacatcagacaaagtttgagatatt 25718592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 25720130 - 25719987
Alignment:
Q  18 taaataagtacctaaaattctccaatgtcaatagttgtgtgatttccttgaacagttcttcattaaacgtagcaaacactttcatatccttcactcatat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  25720130 taaataagtacctaaaattctccaatgtcaatagttgtgtgatttccttgaacagttcttcattaaacgtagcaaacgctttcaaatccttcactcatat 25720031  T
Q  118 ctctacagctttcgaccaatcatgcctatacaaatacaatattt 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  25720030 ctctacagctttcgaccaatcatgcctatacaaatacagtattt 25719987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 25718990 - 25718961
Alignment:
Q  158 attttgaatagtctagctactatctagcac 187  Q
    ||||||||||||||||||||||||||||||    
T  25718990 attttgaatagtctagctactatctagcac 25718961  T

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Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 261 - 557
Target Start/End: Complemental strand, 29685905 - 29685609
Alignment:
Q  261 gaaagcagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttag 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29685905 gaaagcagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttag 29685806  T
Q  361 atttgaatatcaacaatcaacaatagcaaacaaattaacagaaacagaattttatatcagccagaattttcttatgagcagcttaacaacagaaacagaa 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29685805 atttgaatatcaacaatcaacaatagcaaacaaattaacagaaacagaattttatatcagccagaattttcttatgaccagcttaacaacagaaacagaa 29685706  T
Q  461 tcacctttcaaaagtttaattaaaatatgatatagctctattatttaatctgtgagatgaagtaagtatcttgacatcagacaaagtttgagatatt 557  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29685705 tcacccttcaaaattttaattaaaatatgatatagctctattatttaatttgtgagatgaagtaagtatcttgacatcagacaaagtttgagatatt 29685609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 29686125 - 29685956
Alignment:
Q  18 taaataagtacctaaaattctccaatgtcaatagttgtgtgatttccttgaacagttcttcattaaacgtagcaaacactttcatatccttcactcatat 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29686125 taaataagtacctaaaattctccaatgtcaatagttatgtgatttccttgaacagttcttcattaaacgtagcaaacactttcatatccttcactcatat 29686026  T
Q  118 ctctacagctttcgaccaatcatgcctatacaaatacaatattttgaatagtctagctactatctagcac 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29686025 ctctacagctttcgaccaatcatgcctatacaaatacaatattttgaatagtctagctactatctagcac 29685956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 262 - 397
Target Start/End: Complemental strand, 40598470 - 40598335
Alignment:
Q  262 aaagcagcaggtgtcaatgcaccattggttttcaagactcactatttgtcggcttgcactaatcttctgcattgcatataagaagataatcaattttaga 361  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||  |    
T  40598470 aaagcagcaggtgtcaatgcaccattggttttcaagactcaccatttgtctgcttgcactaatctcctgcattgcatataaaaagatcataaatttttta 40598371  T
Q  362 tttgaatatcaacaatcaacaatagcaaacaaatta 397  Q
    ||||||||||||||||||||||||||||||||||||    
T  40598370 tttgaatatcaacaatcaacaatagcaaacaaatta 40598335  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 478
Target Start/End: Complemental strand, 40597869 - 40597802
Alignment:
Q  412 ttatatcagccagaattttcttatgagcagct-taacaacagaaacagaatcacctttcaaaagttta 478  Q
    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||| || |||| ||||    
T  40597869 ttatatcagccagaattttcttctgagcagctccaacaacagaaacagaatcacccttgaaaaattta 40597802  T

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Target: chr4 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 2078756 - 2078619
Alignment:
Q  19 aaataagtacctaaaattctccaatgtcaatagttgtgtgatttccttgaacagttcttcattaaacgtagcaaacactttcatatccttcactcatatc 118  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||    
T  2078756 aaatcagtacctaaaattctccaatgtcagtagctgtgtgatttccttgaacaattcttcattaaacgtggcaaacactttcaaatccttcactaatatc 2078657  T
Q  119 tctacagctttcgaccaatcatgcctatacaaatacaa 156  Q
    |||||||||||||||| |||||||||||||||||||||    
T  2078656 tctacagctttcgaccgatcatgcctatacaaatacaa 2078619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 47414630 - 47414735
Alignment:
Q  27 acctaaaattctccaatgtcaatagttgtgtgatttccttgaacagttcttcattaaacgtagcaaacactttcatatccttcactcatatctctacagc 126  Q
    |||||||||| ||||| ||||| |  ||||| |||||||| || || |||||||||||||  ||||| ||||||| |||||||||| | || || |||||    
T  47414630 acctaaaattatccaaagtcaacaactgtgtaatttccttaaatagctcttcattaaacgcggcaaatactttcaaatccttcactaaaatttccacagc 47414729  T
Q  127 tttcga 132  Q
    ||||||    
T  47414730 tttcga 47414735  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 44877818 - 44877938
Alignment:
Q  25 gtacctaaaattctccaatgtcaatagttgtgtgatttccttgaacagttcttcattaaacgtagcaaacactttcatatccttcactcatatctctaca 124  Q
    ||||||||||||||||| |||||| || |||||||| ||||||||||  ||||||||||| |||| ||||||||||| ||||||||||  ||| || |||    
T  44877818 gtacctaaaattctccagtgtcaaaagctgtgtgatctccttgaacaactcttcattaaatgtagaaaacactttcaaatccttcactagtatttcgaca 44877917  T
Q  125 gctttcgaccaatcatgccta 145  Q
     | || |||| ||||||||||    
T  44877918 cccttggaccgatcatgccta 44877938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 9122498 - 9122450
Alignment:
Q  358 tagatttgaatatcaacaatcaacaatagcaaacaaattaacagaaaca 406  Q
    |||||||||||||||||| |||||||  || |||||||||||| |||||    
T  9122498 tagatttgaatatcaacattcaacaaccgcgaacaaattaacataaaca 9122450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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