View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_120 (Length: 211)
Name: NF1763_low_120
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 42205874 - 42205702
Alignment:
| Q |
16 |
agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt |
115 |
Q |
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| T |
42205874 |
agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt |
42205775 |
T |
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| Q |
116 |
tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagtta |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205774 |
tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagtta |
42205702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 42214742 - 42214570
Alignment:
| Q |
16 |
agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214742 |
agaagaaaaggtacgtcgctttctctgaaaaatttcgtcaagatgagttctgatttgtcgtccgctgttatcccttacaccgatgaactcaccgagaagt |
42214643 |
T |
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| Q |
116 |
tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagtta |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214642 |
tttcatgtccggtaatgaaatccttgtgatgttttttctaatctagctttatacattgttgatatgtaagtta |
42214570 |
T |
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