View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_13 (Length: 567)

Name: NF1763_low_13
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_13
NF1763_low_13
[»] chr2 (2 HSPs)
chr2 (1-507)||(33815400-33815906)
chr2 (432-467)||(32271385-32271420)
[»] chr8 (2 HSPs)
chr8 (432-467)||(21634847-21634882)
chr8 (435-467)||(5515537-5515569)
[»] chr7 (8 HSPs)
chr7 (432-467)||(32089306-32089341)
chr7 (432-467)||(32093063-32093098)
chr7 (432-467)||(32096779-32096814)
chr7 (432-467)||(39128533-39128568)
chr7 (432-467)||(39478477-39478512)
chr7 (432-467)||(41706670-41706705)
chr7 (432-467)||(41812181-41812216)
chr7 (177-230)||(24177714-24177767)
[»] chr6 (2 HSPs)
chr6 (432-467)||(26217275-26217310)
chr6 (433-467)||(11187926-11187960)
[»] chr5 (1 HSPs)
chr5 (165-232)||(38683975-38684042)
[»] chr3 (3 HSPs)
chr3 (432-467)||(38044562-38044597)
chr3 (432-467)||(48838007-48838042)
chr3 (432-467)||(50152374-50152409)
[»] chr1 (2 HSPs)
chr1 (432-467)||(31141989-31142024)
chr1 (165-228)||(51234326-51234389)
[»] chr4 (2 HSPs)
chr4 (432-466)||(7772341-7772375)
chr4 (432-466)||(7777949-7777983)


Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 33815906 - 33815400
Alignment:
Q  1 gcaatcaaacaccataaaacacaaagctgctgccatgctttattacatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815906 gcaatcaaacaccataaaacacaaagctgctgccatgcattattacatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcc 33815807  T
Q  101 taagcacaccttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttccatttgaatcaccc---aacttaaatttgatgat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  33815806 taagcacaccttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttccatttgaatcaccccccaacttaaatttgatgat 33815707  T
Q  198 ttgcatctacttccatttctccgtcgttttgtaagtgnnnnnnnnagggaaggtgttaaatgagtgttgaaaagttagagtcgttcaaataatataagag 297  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||   ||||||    
T  33815706 ttgcatctacttccatttctccgtcgttttgtaagtgttttttatagggaaggtgttaaatgagtgttgaaaagttagagtcgtccaaata---taagag 33815610  T
Q  298 ctcaaatgaataatttggtaagttgcggtgcatgttgtttcttagttgtcgcagaagttccacattgcttaatctttccacatatttagtgtgtgtataa 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33815609 ctcaaatgaataatttggtaagttgcggtgcatgttgtttcttagttgtcgcagaagttccacattgcttaatctttccacatatttagtgtgtatataa 33815510  T
Q  398 tgtgcacactccacaaacaaatgtttctttgaggtaaaattggaacgatacaaagaagattagcatggcctcctcatcgaggatgacacgcacatattaa 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815509 tgtgcacactccacaaacaaatgtttctttgaggtaaaattggaacgatacgaagaagattagcatggcctcctcatcgaggatgacacgcacatattaa 33815410  T
Q  498 gatacggtcc 507  Q
    ||||||||||    
T  33815409 gatacggtcc 33815400  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 32271420 - 32271385
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||||||||||||| |||||||    
T  32271420 taaaattggaacgatacaaagaagattatcatggcc 32271385  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 21634882 - 21634847
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  21634882 taaaattggaacgatacagagaagattagcatggcc 21634847  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 5515537 - 5515569
Alignment:
Q  435 aattggaacgatacaaagaagattagcatggcc 467  Q
    ||||||||||||||| |||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcc 5515569  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 32089341 - 32089306
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  32089341 taaaattggaacgatacagagaagattagcatggcc 32089306  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 32093098 - 32093063
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  32093098 taaaattggaacgatacagagaagattagcatggcc 32093063  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 32096814 - 32096779
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  32096814 taaaattggaacgatacagagaagattagcatggcc 32096779  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 39128568 - 39128533
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  39128568 taaaattggaacgatacagagaagattagcatggcc 39128533  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 39478477 - 39478512
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  39478477 taaaattggaacgatacagagaagattagcatggcc 39478512  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 41706705 - 41706670
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  41706705 taaaattggaacgatacagagaagattagcatggcc 41706670  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 41812181 - 41812216
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  41812181 taaaattggaacgatacagagaagattagcatggcc 41812216  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 24177714 - 24177767
Alignment:
Q  177 acccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgta 230  Q
    ||||||||| ||| ||||||||| ||||| |||| ||||||||||| |||||||    
T  24177714 acccaacttgaatatgatgatttacatctgcttctatttctccgtcattttgta 24177767  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 26217310 - 26217275
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  26217310 taaaattggaacgatacagagaagattagcatggcc 26217275  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 467
Target Start/End: Original strand, 11187926 - 11187960
Alignment:
Q  433 aaaattggaacgatacaaagaagattagcatggcc 467  Q
    ||||||||||||||||| |||||||||||||||||    
T  11187926 aaaattggaacgatacagagaagattagcatggcc 11187960  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 38684042 - 38683975
Alignment:
Q  165 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaag 232  Q
    ||||||| || |||||||||| | ||||||| ||| ||||| |||  |||||||||||||||||||||    
T  38684042 tccatttcaagcacccaacttgattttgatggttttcatctcctttaatttctccgtcgttttgtaag 38683975  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 38044597 - 38044562
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  38044597 taaaattggaacgatacagagaagattagcatggcc 38044562  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 48838007 - 48838042
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  48838007 taaaattggaacgatacagagaagattagcatggcc 48838042  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 50152374 - 50152409
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  50152374 taaaattggaacgatacagagaagattagcatggcc 50152409  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 31142024 - 31141989
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggcc 467  Q
    |||||||||||||||||| |||||||||||||||||    
T  31142024 taaaattggaacgatacagagaagattagcatggcc 31141989  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 51234389 - 51234326
Alignment:
Q  165 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttg 228  Q
    ||||||| || |||||||||| ||||||||||||| ||||| |||| |||||||| || |||||    
T  51234389 tccatttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttg 51234326  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 466
Target Start/End: Complemental strand, 7772375 - 7772341
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggc 466  Q
    |||||||||||||||||| ||||||||||||||||    
T  7772375 taaaattggaacgatacagagaagattagcatggc 7772341  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 466
Target Start/End: Complemental strand, 7777983 - 7777949
Alignment:
Q  432 taaaattggaacgatacaaagaagattagcatggc 466  Q
    |||||||||||||||||| ||||||||||||||||    
T  7777983 taaaattggaacgatacagagaagattagcatggc 7777949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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