View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_14 (Length: 560)

Name: NF1763_low_14
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_14
NF1763_low_14
[»] chr8 (15 HSPs)
chr8 (152-540)||(27066956-27067344)
chr8 (1-150)||(27067412-27067560)
chr8 (311-535)||(27080645-27080869)
chr8 (355-540)||(27053767-27053952)
chr8 (146-265)||(22651983-22652106)
chr8 (145-222)||(29447084-29447163)
chr8 (146-228)||(21465419-21465503)
chr8 (146-222)||(2572030-2572108)
chr8 (157-222)||(26902149-26902216)
chr8 (145-216)||(15816109-15816182)
chr8 (147-193)||(18170485-18170533)
chr8 (147-193)||(18634053-18634101)
chr8 (151-193)||(24669445-24669489)
chr8 (151-193)||(40332203-40332247)
chr8 (146-199)||(25566848-25566903)
[»] chr5 (11 HSPs)
chr5 (146-231)||(19579708-19579795)
chr5 (152-265)||(41091186-41091303)
chr5 (146-227)||(3966510-3966593)
chr5 (146-219)||(39698548-39698623)
chr5 (174-231)||(21542067-21542124)
chr5 (146-222)||(21522757-21522835)
chr5 (146-222)||(21533323-21533401)
chr5 (151-189)||(6326304-6326344)
chr5 (151-229)||(30098338-30098418)
chr5 (174-222)||(6401535-6401583)
chr5 (147-216)||(30080481-30080552)
[»] chr4 (3 HSPs)
chr4 (146-231)||(847958-848045)
chr4 (145-222)||(24613675-24613754)
chr4 (152-231)||(30982843-30982924)
[»] scaffold0044 (1 HSPs)
scaffold0044 (151-231)||(53192-53274)
[»] chr7 (5 HSPs)
chr7 (144-199)||(27945046-27945103)
chr7 (146-216)||(24339649-24339721)
chr7 (146-193)||(21880159-21880208)
chr7 (146-193)||(28155577-28155626)
chr7 (147-212)||(1885581-1885648)
[»] chr1 (9 HSPs)
chr1 (151-222)||(6612145-6612218)
chr1 (176-222)||(21032245-21032291)
chr1 (151-265)||(25361898-25362012)
chr1 (151-216)||(44482242-44482309)
chr1 (159-216)||(47989517-47989576)
chr1 (146-193)||(41877473-41877522)
chr1 (145-199)||(24577183-24577239)
chr1 (159-216)||(30173742-30173801)
chr1 (146-191)||(31015050-31015097)
[»] chr6 (11 HSPs)
chr6 (146-231)||(16766704-16766791)
chr6 (146-212)||(21395292-21395359)
chr6 (145-231)||(31384926-31385013)
chr6 (145-222)||(8365493-8365572)
chr6 (146-231)||(9107335-9107422)
chr6 (146-222)||(9195728-9195806)
chr6 (146-193)||(7977833-7977882)
chr6 (145-199)||(10770671-10770727)
chr6 (151-216)||(5970088-5970155)
chr6 (174-222)||(10294144-10294192)
chr6 (146-199)||(12696331-12696386)
[»] chr3 (13 HSPs)
chr3 (151-234)||(15796256-15796341)
chr3 (146-231)||(4987256-4987343)
chr3 (174-271)||(34185046-34185145)
chr3 (145-221)||(14209119-14209197)
chr3 (174-221)||(14216929-14216976)
chr3 (174-221)||(14223058-14223105)
chr3 (153-191)||(4990972-4991012)
chr3 (145-222)||(750592-750671)
chr3 (146-211)||(8039820-8039887)
chr3 (146-199)||(9800047-9800102)
chr3 (146-231)||(14832106-14832193)
chr3 (174-222)||(41961624-41961672)
chr3 (146-199)||(49651783-49651838)
[»] scaffold0018 (1 HSPs)
scaffold0018 (151-195)||(192250-192296)
[»] chr2 (3 HSPs)
chr2 (146-222)||(44860327-44860405)
chr2 (153-216)||(11223843-11223908)
chr2 (146-221)||(30717505-30717582)
[»] scaffold0049 (1 HSPs)
scaffold0049 (146-193)||(63780-63829)
[»] scaffold0004 (1 HSPs)
scaffold0004 (146-189)||(92814-92859)
[»] scaffold0136 (1 HSPs)
scaffold0136 (159-216)||(3829-3888)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 152 - 540
Target Start/End: Complemental strand, 27067344 - 27066956
Alignment:
Q  152 atttgagaaaattacataattctgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaacgtctaatctgaatagtg 251  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||||| ||||||||||||||||||| ||  ||||    
T  27067344 atttgagaaaattacataattctgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgtgtcgaacaccggaacgtctaatccgaggagtg 27067245  T
Q  252 tatgtgcttcatagttgatgtctcttttattattattctaattagttatgtttatgaataatgcaggttggtttagctataaatcatgaaaaagagaaga 351  Q
    |  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067244 tccgtgcttcatagttgatgtctcttttattattattctaattgtttatgtttatgaataatgcaggttggtttagctataaatcatgaaaaagagaaga 27067145  T
Q  352 accaaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaaaacaacttaccaaaaccatctttcatcctctctaaggcctc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067144 accaaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaaaacaacttaccaaaaccatctttcatcctctctaaggcctc 27067045  T
Q  452 accactcagcgccaccgaagccgcgacattcacaaaacacgcggccgccaacacactctccacaaagctgccggagttctgctccgccg 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27067044 accactcagcgccaccgaagccgcgacattcacaaaacacgcggccgccaacacactctccacaaagctgccggaattctgctccgccg 27066956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 27067560 - 27067412
Alignment:
Q  1 cagaaacaacttggtcacattattcacaccctcttcatccttctctccatactcactgtaagtttannnnnnncttcatttcatcactattttgttgtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  27067560 cagaaacaacttggtcacattattcacaccctcttcatccttctctccatactcactgtaagtttatttttt-cttcatttcatcactattttgttgtcc 27067462  T
Q  101 aataattaattgttgcataaatactttaaatgttagtatcttacactaaa 150  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27067461 aataattaattgttgcataaatactttaaatgatagtatcttacactaaa 27067412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 311 - 535
Target Start/End: Complemental strand, 27080869 - 27080645
Alignment:
Q  311 aatgcaggttggtttagctataaatcatgaaaaagagaagaaccaaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaa 410  Q
    ||||||||||||||||||  |  |||||| |  ||| || |||||||||||||||||| | ||||||| || ||||||||||||||| ||||||||||||    
T  27080869 aatgcaggttggtttagcagtggatcatgcaggagacaaaaaccaaaacccattcactgcgaaagcttttgcaattcgttattgggacagagtgatcaaa 27080770  T
Q  411 aacaacttaccaaaaccatctttcatcctctctaaggcctcaccactcagcgccaccgaagccgcgacattcacaaaacacgcggccgccaacacactct 510  Q
    ||||| |||||||||||| | |||||||||  |||||| ||||||||||||||||||||  ||||| | ||  | ||||||||||| |||||||||||||    
T  27080769 aacaagttaccaaaaccaacattcatcctcaataaggcatcaccactcagcgccaccgagaccgcggcttttgcgaaacacgcggcagccaacacactct 27080670  T
Q  511 ccacaaagctgccggagttctgctc 535  Q
    |||||||| ||||||||||||||||    
T  27080669 ccacaaagttgccggagttctgctc 27080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 355 - 540
Target Start/End: Complemental strand, 27053952 - 27053767
Alignment:
Q  355 aaaacccattcactccaaaagcttatgtaattcgttattgggatagagtgatcaaaaacaacttaccaaaaccatctttcatcctctctaaggcctcacc 454  Q
    ||||| ||||||||||||| || |||| |||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  27053952 aaaactcattcactccaaaggcgtatgcaattcggtattgggacagagtgatcaaaaacaacttgccaaaaccatccttcatcctctccaaggcgtcacc 27053853  T
Q  455 actcagcgccaccgaagccgcgacattcacaaaacacgcggccgccaacacactctccacaaagctgccggagttctgctccgccg 540  Q
    ||| ||||||||||| || ||  | ||   ||| ||||| |||||||||||| | ||||||||| ||||||| |||||||| ||||    
T  27053852 acttagcgccaccgatgctgcagcttttgaaaagcacgctgccgccaacacattatccacaaagttgccggaattctgctctgccg 27053767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 22651983 - 22652106
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg--aacgtctaat 241  Q
    |||| ||||||| ||||| |||||||||  | |||||||||||||||||| |||||  |||||||||||||||||||||  |||||||   |||||||||    
T  22651983 ctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaat 22652082  T
Q  242 ctgaatagtgtatgtgcttcatag 265  Q
    | ||  |||||  |||||||||||    
T  22652083 ccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 29447163 - 29447084
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    ||||| ||||||||||||| |||||||||  ||||| |||||||||||||| | |||  |||||||||||||||||||||    
T  29447163 actaataatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtc 29447084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 21465419 - 21465503
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacac 228  Q
    |||| ||||||| ||||| | |||||||  ||||||||||||||| |||| ||||| |||||||||||||||| ||||| |||||    
T  21465419 ctaataatttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcgtgtcagtgtcggacacgacacgtgtccaacac 21465503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 2572108 - 2572030
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||| ||||||| ||||| ||||||||   |||||||||||||||||||| |||||  ||||||||||||||| |||||    
T  2572108 ctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgtc 2572030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 26902216 - 26902149
Alignment:
Q  157 agaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    ||||||| |||||||||  |||||||| | ||||||||| ||| |||||||||||||||||| |||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtc 26902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 15816182 - 15816109
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    ||||| ||||||| ||||| ||||||||   |||||||| ||||||||||| |||||  |||||||||||||||    
T  15816182 actaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgaca 15816109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 18170533 - 18170485
Alignment:
Q  147 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18170533 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18170485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 18634101 - 18634053
Alignment:
Q  147 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18634101 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18634053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 24669445 - 24669489
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||    
T  24669445 aatttgaggaaattacataattcagtgtaattacaagtgtcggtg 24669489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 40332203 - 40332247
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  40332203 aatttgagaaaatcacataattcagtgtaattacaagtgtcggtg 40332247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 25566848 - 25566903
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 199  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  25566848 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 19579708 - 19579795
Alignment:
Q  146 ctaaaaatttgagaaaattacataattctgt--aattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||| ||||||||||||| ||||||||  ||  ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||    
T  19579708 ctaataatttgagaaaatcacataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggacacgacatatgtctaacaccgg 19579795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 41091303 - 41091186
Alignment:
Q  152 atttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacacc--ggaacgtctaatctgaat 247  Q
    |||||||||||| |||||||||  |||||||| | |||||| || ||||| | |||||||| ||||||||||| ||||||  || |||||||||||||      
T  41091303 atttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcaatgtcggacgcgacatgtgtctaacaccaaggcacgtctaatctgagg 41091204  T
Q  248 agtgtatgtgcttcatag 265  Q
    |||||  |||||||||||    
T  41091203 agtgttcgtgcttcatag 41091186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 3966510 - 3966593
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaaca 227  Q
    |||| ||||||||||||| ||| |||||  |||||||| | ||||||||| ||||| |||||||||||| ||||||||| ||||    
T  3966510 ctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaacatgtgtccaaca 3966593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 39698548 - 39698623
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgt 219  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||| ||| |||||  ||||||||||||||||||    
T  39698548 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgt 39698623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 21542067 - 21542124
Alignment:
Q  174 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||||||||||||||||||| |||||  ||||||||||||||| |||||  |||||||    
T  21542067 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgg 21542124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 21522757 - 21522835
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||| ||||| | ||||| |||||||||  ||||||||||| |||||||| |||||  ||||||||||||||| |||||    
T  21522757 ctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21522835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 21533323 - 21533401
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||| ||||| | ||||| |||||||||  ||||||||||| |||||||| |||||  ||||||||||||||| |||||    
T  21533323 ctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21533401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 6326344 - 6326304
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtc 189  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  6326344 aatttgagaaaattacataattcagtgtaattacaagtgtc 6326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 30098338 - 30098418
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacacc 229  Q
    ||||||||||||| |||||||||  |||||||| |  |||||||  || || |||||||||||||||| |||||| |||||    
T  30098338 aatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggacacgacacgtgtcagacacc 30098418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 6401535 - 6401583
Alignment:
Q  174 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||||||| | ||||||||| ||||| |||||||||||||||| |||||    
T  6401535 tgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtc 6401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 30080552 - 30080481
Alignment:
Q  147 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    ||||| ||||||||||| |||||||||  |||||| |||||| ||||||  |||| ||||||||||| ||||    
T  30080552 taaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgtggtgttagtgtcggacatgaca 30080481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 847958 - 848045
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||| | |||  ||||||||||||| | ||||| ||||||||    
T  847958 ctaataatttgagaaaattacataattcactataattacaagtgtcggtgtcttgttggtgtcggacacgaaacgtgtcgaacaccgg 848045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 24613754 - 24613675
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    ||||| ||||||||||||| |||||||||  ||||| |||||||||||||| | |||  ||||| ||||||||| |||||    
T  24613754 actaataatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtc 24613675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 30982924 - 30982843
Alignment:
Q  152 atttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||||||||||| ||||| |||  |||||||| ||||||||||| |||||  ||||| ||||||||| |||||  |||||||    
T  30982924 atttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgg 30982843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 53192 - 53274
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    ||||||||||||| |||||||||  |||||||| |||||||||||||||||  |||||||||| |||| |||||  |||||||    
T  53192 aatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgg 53274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 27945046 - 27945103
Alignment:
Q  144 cactaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 199  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  27945046 cactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgt 27945103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 24339649 - 24339721
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||  |||||||||||||||    
T  24339649 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgaca 24339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 21880159 - 21880208
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  21880159 ctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtg 21880208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 28155577 - 28155626
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  28155577 ctaataatttgagaaaattacataattcggtgtaattacaagtgtcggtg 28155626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 1885581 - 1885648
Alignment:
Q  147 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacac 212  Q
    ||||| ||||| ||||| |||||||||  |||||| ||||||||||||| |||||  |||||||||||    
T  1885581 taaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 1885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 6612218 - 6612145
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    ||||||| |||||||||||||||  |||||||||||||||||||| |||||   |||||||||||| |||||||    
T  6612218 aatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtc 6612145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 21032245 - 21032291
Alignment:
Q  176 taattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||||    
T  21032245 taattacaaatgtcggtgtcgtgtgggtgtcggacacgacatgtgtc 21032291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 25361898 - 25362012
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaacgtctaatctgaata 248  Q
    ||||||||||||| |||||||||  |||||||| | ||||| ||| |||||  |||||||||||||||  ||||  ||||||||||  |||||| ||| |    
T  25361898 aatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacgaca--tgtccgacaccggaacacctaatccgaaga 25361995  T
Q  249 gtgtatgtgcttcatag 265  Q
    ||||  |||||||||||    
T  25361996 gtgtccgtgcttcatag 25362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 44482242 - 44482309
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    ||||||||||||| |||||||||  |||||||| | ||||||||| |||||  |||||||||||||||    
T  44482242 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgaca 44482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 47989517 - 47989576
Alignment:
Q  159 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    ||||| |||||||||  |||||||||||||||||||| |||||  |||||||||||||||    
T  47989517 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgaca 47989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 41877522 - 41877473
Alignment:
Q  146 ctaaaaatttgagaaaattacataatt--ctgtaattacaagtgtcggtg 193  Q
    |||| ||||||||||||||||||||||   ||||||||||||||||||||    
T  41877522 ctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtg 41877473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 24577239 - 24577183
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 199  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  24577239 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 24577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 30173801 - 30173742
Alignment:
Q  159 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    |||||||||||| ||  |||||||||||||||||||| |||||  || ||||||||||||    
T  30173801 aaaattacataactcagtgtaattacaagtgtcggtgtcgtgtccgtatcggacacgaca 30173742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 31015050 - 31015097
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcgg 191  Q
    |||| ||||||||||||| |||||||||  ||||||||||||||||||    
T  31015050 ctaataatttgagaaaatcacataattcagtgtaattacaagtgtcgg 31015097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 16766704 - 16766791
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||  ||||||||||| ||| |||||  |||||||    
T  16766704 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgg 16766791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 21395359 - 21395292
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacac 212  Q
    |||| ||||||||||||| ||||||||   |||||||||||||||||||| ||||| ||||||||||||    
T  21395359 ctaataatttgagaaaat-acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacac 21395292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 31384926 - 31385013
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||| ||| ||||| ||||| |||||||||| |||||  |||||||    
T  31384926 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt-agtgttggacacgacacgtgtcctacaccgg 31385013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 8365572 - 8365493
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    ||||| ||||||| || || |||||||||  |||||||||||||||||||| |||||  || |||||||||||| |||||    
T  8365572 actaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 8365493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 9107422 - 9107335
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||| ||||||| ||||| ||| |||||  |||||||||||||||||||| |||||  ||||||||||| || ||||||  |||||||    
T  9107422 ctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacgtgtgtccgacaccgg 9107335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 9195806 - 9195728
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||| ||||||||||||| ||||||||   |||||||| | ||||||||| |||||  ||||| |||||||||||||||    
T  9195806 ctaataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtctgacacgacatgtgtc 9195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 7977882 - 7977833
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    |||| ||||||| |||||||||||||||  ||||||||||||||||||||    
T  7977882 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtg 7977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 10770727 - 10770671
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 199  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  10770727 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 10770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 5970155 - 5970088
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    ||||||| ||||| |||||||||  ||||||||||| ||| |||| |||||  |||||||||||||||    
T  5970155 aatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgaca 5970088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 10294144 - 10294192
Alignment:
Q  174 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||||||| | ||||||||| |||||  |||||||||||||||||||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtc 10294192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 12696331 - 12696386
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 199  Q
    |||| ||||||| |||||||||||||||  |||||||||||||||| ||| |||||    
T  12696331 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgt 12696386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 15796341 - 15796256
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaac 234  Q
    ||||||| ||||| | |||||||  ||||||||||| |||||||| |||||  ||||||||||| ||| ||||| |||||||||||    
T  15796341 aatttgaaaaaatcatataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgtccaacaccggaac 15796256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 4987343 - 4987256
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||| |||| |||||  |||| |||||||||| |||||  |||||||    
T  4987343 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgg 4987256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 34185145 - 34185046
Alignment:
Q  174 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg--aacgtctaatctgaatagtgtatgtgcttcatagttgatg 271  Q
    |||||||||||||||||||| |||||   ||||||||| ||||||||||  |||||||   ||| |||||| ||  |||||  |||||||||||||||||    
T  34185145 tgtaattacaagtgtcggtgtcgtgtccatgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagttgatg 34185046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 14209119 - 14209197
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 221  Q
    ||||| ||||| | ||||| |||||||||  |||||||||||||||| ||| |||||  ||||||||||||||| ||||    
T  14209119 actaataattttaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 14216929 - 14216976
Alignment:
Q  174 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 221  Q
    |||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  14216929 tgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgt 14216976  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 14223058 - 14223105
Alignment:
Q  174 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 221  Q
    |||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  14223058 tgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgt 14223105  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 4991012 - 4990972
Alignment:
Q  153 tttgagaaaattacataattc--tgtaattacaagtgtcgg 191  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  4991012 tttgagaaaattacataattcagtgtaattacaagtgtcgg 4990972  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 750671 - 750592
Alignment:
Q  145 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    ||||| ||||||| || || |||||||||  || ||||||||||||||||| |||||  || |||||||||||| |||||    
T  750671 actaataatttgaaaatatcacataattcgctgcaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 750592  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 8039887 - 8039820
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggaca 211  Q
    |||| ||||||||||||||| |||||||  |||||||| | ||||||||| |||||  ||||||||||    
T  8039887 ctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 8039820  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 9800047 - 9800102
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 199  Q
    |||| |||||||||||||||||||||||  |||||||  ||||||||||| |||||    
T  9800047 ctaataatttgagaaaattacataattccgtgtaattgtaagtgtcggtgtcgtgt 9800102  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 14832106 - 14832193
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 231  Q
    |||| ||||||| ||||| |||||| ||  |||||||||||||||| ||| |||||  || |||||||||||| |||||  |||||||    
T  14832106 ctaataatttgaaaaaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgg 14832193  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 41961672 - 41961624
Alignment:
Q  174 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||||||||||||||||||| |||||  || |||||||||||| |||||    
T  41961672 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 41961624  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 49651838 - 49651783
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 199  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  49651838 ctaataatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgt 49651783  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 192296 - 192250
Alignment:
Q  151 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgcc 195  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  192296 aatttgagaaaattacataattcggtgtaattacaagtgtctgtgcc 192250  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 44860327 - 44860405
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 222  Q
    |||| |||||||||||||  ||||||||  |||||||| | ||||||||| |||||  |||| ||||||||||||||||    
T  44860327 ctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtc 44860405  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 11223908 - 11223843
Alignment:
Q  153 tttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    ||||| ||||| |||||||||  |||||||||||||||||||| | |||  |||||||||||||||    
T  11223908 tttgaaaaaataacataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacacgaca 11223843  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 30717582 - 30717505
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 221  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||||| || |||||   |||||||||||||| ||||    
T  30717582 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgt 30717505  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 63780 - 63829
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 193  Q
    |||| |||||||||||||||||||||||  || |||||||||||||||||    
T  63780 ctaataatttgagaaaattacataattcagtgcaattacaagtgtcggtg 63829  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 92814 - 92859
Alignment:
Q  146 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtc 189  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||    
T  92814 ctaataatttgagaaaattacataattcagtgtaattacaagtgtc 92859  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 3888 - 3829
Alignment:
Q  159 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 216  Q
    ||||| |||||||||  |||||||||||||||| ||| |||||  |||||||||||||||    
T  3888 aaaatcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgaca 3829  T

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