View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_low_15 (Length: 519)
Name: NF1763_low_15
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 24567907 - 24568395
Alignment:
| Q |
19 |
ttaatggcctccctcaaacttgagtatgaattgcaaagttaattacatagggaaattatgttataacttgaattgaatcattgttaaaatgtcataagaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24567907 |
ttaatggcctccctcaaacttgagtatgaattgcaaagttaattacataggaaaattatgttataacttgaattgaatcattgttaaaatgtcataagaa |
24568006 |
T |
|
| Q |
119 |
tagtagtagtataggataataaatatgttacacaaaagggaaccattttgcagaatattctacaacaaattcacacnnnnnnnnnnncataaatttaagg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24568007 |
tagtagtagtataggataataaatatgttgcacaaaagggaaccattttgcagaatattctacaacaaattcacacaaaaaaaaa--cataaatttaagg |
24568104 |
T |
|
| Q |
219 |
caattgaatgcacaataactgcacaagttttannnnnnnnncacgtgttgcagtaatgtataatgtgcatggggatgtacatatgaatgaacatgtaata |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24568105 |
taattgaatgcacaataactgcacaagttttattttttttgcacgtgttgcagtaatgtataatgtgcatggggatgtacatatgaatgaacatgtaata |
24568204 |
T |
|
| Q |
319 |
tatgatcatgcccaacaaataagggaccacaaccgtgtgaaagggaagacaccaatatcgaacaattaaggccttctaatgagtgcaaaccgtccttcac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24568205 |
tatgatcatgcccaacaaataagggaccacaaccgtgtgaaagagaagacaccaatatcgaacaattaaggccttctaatgagtgcaaaccgtccttcac |
24568304 |
T |
|
| Q |
419 |
atattctatctggtatctgcaattatattataattccaaattgtgcaaaagtttgcgatattcaaagttagaatatgctttagcccctatg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
24568305 |
atattctatctggtatctgcaattatattataattccaaattgtgcaaaagtttgcaatattcaaaggtagaatatgctttagcccctatg |
24568395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University