View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_16 (Length: 516)
Name: NF1763_low_16
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_16 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 17248013 - 17248328
Alignment:
| Q |
1 |
caataatcggctaatttggcacaatgtgtgcaactttttactctcttatgtttggatattgttccttttgtttctcttttaatttcttatactctggtta |
100 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17248013 |
caataatcggctaatttggcaccatgcgtgcaactttttactctcttatatttggatattgttccttttgtttctcttttaatttcttatactctgatta |
17248112 |
T |
|
| Q |
101 |
gaccggaaaaacttgtcatggtttctataatttcattacctttactcagattatgtcactttagatgaatatgaggtatgaactcggtaattcnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
17248113 |
gaccggaaaaacttgtcatggtttctataatttcattaccttta-------------------gatgaatatgacgtatgaactcggtaatttttttttt |
17248193 |
T |
|
| Q |
201 |
gtttatctaatatattatctaaagtttgaaggcttaaaatggccatatgattataatttataagattcgtttgagtatcttgatttggtatttgaaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17248194 |
gtttatctaatatattatctaaagtttgaaggcttaaaatggccatatgattataatttataagattcatttgagtatcttgatttggtatttgaaatat |
17248293 |
T |
|
| Q |
301 |
ccgtgttaaagtaatttgagaagagatgtagcatg |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
17248294 |
ccgtgttaaagtaatttgagaagagatgtagcatg |
17248328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 341 - 443
Target Start/End: Original strand, 17248501 - 17248604
Alignment:
| Q |
341 |
caaaattaagggattgataatgtatttaagccttaattaaaccatagaagttgaacnnnnnnntc-ttgaagaacaaaaatgaaacctaaattctaaagt |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
17248501 |
caaaattaagggattgataatgtatttaagccttaattaaaccaaagaagttgaacaaaaaaatctttgaagaacaaaaatgaaacctaaattctaaagt |
17248600 |
T |
|
| Q |
440 |
gtaa |
443 |
Q |
| |
|
|||| |
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| T |
17248601 |
gtaa |
17248604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 17249656 - 17249718
Alignment:
| Q |
436 |
aagtgtaatttgaaagactcggtgaatttgcaacgcagctgtaatttatgcactacagttctt |
498 |
Q |
| |
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||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
17249656 |
aagtgaaatttgaaagactgggtgaattcgcaacgcagctgtaatttatacactacagttctt |
17249718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 25865380 - 25865190
Alignment:
| Q |
59 |
ttgttccttttgtttctcttttaatttcttatactctggttagaccggaaaaacttgtcatggtttctataatttcattacctttactcagattatgtca |
158 |
Q |
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||||||||| |||||| |||||| |||| |||||| || |||| | |||||| ||||||||||||||||||||||||||| | | |||||||||||| | |
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| T |
25865380 |
ttgttccttctgtttcccttttattttcgtatactttgattagcctggaaaagcttgtcatggtttctataatttcattatccctgctcagattatgtga |
25865281 |
T |
|
| Q |
159 |
ctttagatgaatatgaggtatgaactcggtaattcnnnnnnngtttatctaatatattatctaaagtttgaaggcttaaaatggccatatga |
250 |
Q |
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|| | ||||||||||| |||||||||||| || |||||||| ||||||| |||||||||| |||| ||| ||||| ||||||| |
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| T |
25865280 |
ctcttgatgaatatgacttatgaactcggt-ctttgttttttgtttatcttatatattctctaaagttttaaggtttataatggacatatga |
25865190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 25850107 - 25850029
Alignment:
| Q |
105 |
ggaaaaacttgtcatggtttctataatttcattacctttactcagattatgtcactttagatgaatatgaggtatgaact |
184 |
Q |
| |
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|||||||||| |||| ||||||||| |||||||| |||| |||||||||||| | |||||| |||||||| |||||||| |
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| T |
25850107 |
ggaaaaacttttcatagtttctatagtttcattatctttgctcagattatgtga-tttagaagaatatgacttatgaact |
25850029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 15632 - 15519
Alignment:
| Q |
1 |
caataatcggctaatttggcacaatgtgtgcaactttttactctcttatgtttggatattgttccttttgtttctcttttaatttcttatactctggtta |
100 |
Q |
| |
|
||||||| |||||||| |||| ||| |||| ||| ||||||||||||||||| || ||||||||| |||||| |||||||||||||| |||||||| |
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| T |
15632 |
caataatatgctaatttagcaccatgcatgcagcttgttactctcttatgtttgaatcttgttccttatgtttcatttttaatttcttatggtctggtta |
15533 |
T |
|
| Q |
101 |
gaccggaaaaactt |
114 |
Q |
| |
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|| |||||||||| |
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| T |
15532 |
aactggaaaaactt |
15519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 331
Target Start/End: Original strand, 18068 - 18196
Alignment:
| Q |
201 |
gtttatctaatatattatctaaagtttgaaggcttaaaatggccatatgattataatttataagattcgtttgagtatcttgatttggtatttgaaatat |
300 |
Q |
| |
|
|||||| | |||| || |||||||||| || | || |||||| ||||||| | || || ||||||||||||||||| ||||| ||| ||||| ||| || |
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| T |
18068 |
gtttatattatattttctctaaagttttaatgtttgaaatggtcatatgaatttatttcataagattcgtttgagtgtcttgttttaatatttcaaagat |
18167 |
T |
|
| Q |
301 |
ccgtgttaaagtaatttgagaagagatgtag |
331 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
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| T |
18168 |
--gtgttaaagttatttgagaagagatgtag |
18196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 17875 - 17992
Alignment:
| Q |
1 |
caataatcggctaatttggcacaatgtgtgcaactttttactctcttatgtttg-gatattgttccttttgtttctcttttaatttcttatactctggtt |
99 |
Q |
| |
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||||||| |||||||| |||| ||| |||| ||| |||||||||||| |||| ||| |||||| || | |||| ||||||||| |||||||||| | |
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| T |
17875 |
caataatatgctaatttagcaccatgcatgcagcttgttactctcttatttttgagatcttgttctttctatttcctttttaatttattatactctgaat |
17974 |
T |
|
| Q |
100 |
agaccggaaaaacttgtc |
117 |
Q |
| |
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| || ||||||||||||| |
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|
| T |
17975 |
aaactggaaaaacttgtc |
17992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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