View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_23 (Length: 462)
Name: NF1763_low_23
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 39210822 - 39210374
Alignment:
| Q |
1 |
caccaacattggaggcgcacatagctagtcaaccctattcttatctcatcctgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctg |
100 |
Q |
| |
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||||||||||||||||||||| || ||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39210822 |
caccaacattggaggcgcacaaagatagacaaccctattgttagctgctcctgtgacacctaatttgatctttgctccttcaatcaacttatgcgcgctg |
39210723 |
T |
|
| Q |
101 |
cacaatgcttgccattcaccagaaaaaacacacgacaactgttcatcatgacaaaaatccgttaacaactttcaagtattcccaggcaatcaatgacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
39210722 |
cacaatgcttgccattcaccagaaaaaacacatgacaaccgttcatcatgacaaaaatccgtaaacaacttccaagtatttccaggcaatcaatgacagt |
39210623 |
T |
|
| Q |
201 |
taattcaagtttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaattctgcatatagacaatcatacaactaaccaacattccaaaagta |
300 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39210622 |
taattcaattttctcagcctgaaatgcagattgacaaaagtcaagccaattcaaattctgcatatagacaatcatacaactcaccaacattccaaaagta |
39210523 |
T |
|
| Q |
301 |
acgtcagaagcggttaactccttaacaattgtgttata---gaaggtagtgggaagtaaaagggcagaagaaccatatggtatgaatggattaacgtaag |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
39210522 |
acgtcagaagcggttaactccttaacaattgtgttatagaagaaggtagtgggaagtaaaagggcagaagaaccatatggtatgaagggatt-acgtaag |
39210424 |
T |
|
| Q |
398 |
catgagcactatggttctgtaacaacattctttggggaggagtgctttga |
447 |
Q |
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| T |
39210423 |
catgagcactatggttctgcaacaacattctttgtggaggagtgctttga |
39210374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 27510111 - 27510379
Alignment:
| Q |
1 |
caccaacattggaggcgcacatagctagtcaaccctattcttatctcatcctgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctg |
100 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27510111 |
caccaacattggaggcgcacaaagatagacaaccctattgttagctgctcccgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctg |
27510210 |
T |
|
| Q |
101 |
cacaatgcttgccattcaccagaaaaaacacacgacaactgttcatcatgacaaaaatccgttaacaactttcaagtat-tcccaggcaatcaatgacag |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
27510211 |
cacaatgcttgccattcaccagaaaaaacacatgacaactgt---tcatgacaaaaatccgtaaacaacttccaagtatagcccaggcaatcaatgacag |
27510307 |
T |
|
| Q |
200 |
ttaattcaagtttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaattctgcatatagacaa |
271 |
Q |
| |
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|| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
27510308 |
ttgattcagttttcccagcccgaaatgcagattgacaaaagccaagccaattcaaattctgcatatagacaa |
27510379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 268 - 447
Target Start/End: Original strand, 27510436 - 27510615
Alignment:
| Q |
268 |
acaatcatacaactaaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaaggtagtgggaagtaaaagggcagaag |
367 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27510436 |
acaatcatacaactcaccaacattccaaaagtaacgtcagaagaggttaactcctaatcaattgtgttataaaaggtagtgggaagtaaaagggcagaag |
27510535 |
T |
|
| Q |
368 |
aaccatatggtatgaatggattaacgtaagcatgagcactatggttctgtaacaacattctttggggaggagtgctttga |
447 |
Q |
| |
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| T |
27510536 |
aaccatatggtatgaaggaatttacgtacgcatgagcactatggttctgcaacaacattctttgtggaggagtgctttga |
27510615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 53 - 271
Target Start/End: Complemental strand, 27271235 - 27271016
Alignment:
| Q |
53 |
gtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctgcacaatgcttgccattcaccagaaaaaacacacgacaactgttcatcatgac |
152 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||| |||||||| ||||| |
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| T |
27271235 |
gtgacacctaatttgatatttgctccttcaatcaacttacgcgcgttgcacaatgtttgccattcaccagaaaaatcacatgacagctgttcattatgac |
27271136 |
T |
|
| Q |
153 |
aaaaatccgttaacaactttcaagt-attcccaggcaatcaatgacagttaattcaagtttctcagcccgaaatgcagattgacaaaagtcaagccaatt |
251 |
Q |
| |
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| || ||| | |||||||| ||||| | |||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
27271135 |
agaattccataaacaacttccaagtaaagcccaggaaatcaatgacagttaattcagttttcacagccggaaatgcagattgacaaaagccaagccaatt |
27271036 |
T |
|
| Q |
252 |
caaattctgcatatagacaa |
271 |
Q |
| |
|
|||||| |||| |||||||| |
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|
| T |
27271035 |
caaattatgcacatagacaa |
27271016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31949803 - 31949642
Alignment:
| Q |
1 |
caccaacattggaggcgcacatagctagtcaaccctattcttatctcatcctgtgacacctaatttgatctttgctccttcaatcaacttacgcgcgctg |
100 |
Q |
| |
|
||||||||||||||| |||||||| || ||||| |||| ||||| ||| |||||||| | |||||||||| |||| | ||||||||||| ||| || |
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| T |
31949803 |
caccaacattggaggtgcacatagatacacaaccttattgctatctgctcccgtgacaccaagtttgatctttattcctgccatcaacttacgggcgttg |
31949704 |
T |
|
| Q |
101 |
--cacaatgcttgccattcaccagaaaaaacacacgacaactgttcatcatgacaaaaatcc |
160 |
Q |
| |
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|||| | | |||| ||||||||||| ||||| ||||| | || ||||||||| |||||| |
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|
| T |
31949703 |
cacacagaggtggccactcaccagaaaatacacaagacaaatcttgatcatgacagaaatcc |
31949642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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