View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_24 (Length: 454)
Name: NF1763_low_24
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 42331877 - 42332170
Alignment:
| Q |
17 |
atagtaccttctgagtgatggattcagttcgtaacaataacaaattaagctgcgtaattcgattcatttatttttatagcaatagcatatcaaaaattga |
116 |
Q |
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| T |
42331877 |
atagtaccttctgagtgatggattcagttcgtaacaataacaaattaagctgcgtaattcgattcatttatttt-----caatagtct-tgaaaaattga |
42331970 |
T |
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| Q |
117 |
gctatgtactgtaatgtaaattatgtttagcaatagcatgtaaaattg---------------aaagaatatagcattctttttgttaattattatcgtg |
201 |
Q |
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| T |
42331971 |
gctatgtactgtaatgtaaattatgtttagcaatagcatgtaaaattgcaagttgaaaaattgaaagaatatagcattctttttgttaattatt------ |
42332064 |
T |
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| Q |
202 |
ctttttgtcgtgaagctgtaaaagaagtctatggatcacaggattggtttctgaattgggactagttgatcgatccacaccatgcattcaatgtgacagt |
301 |
Q |
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| T |
42332065 |
------gtcgtgaagctgtaaaagaagtctatggatcacaggattggtttctgaattgggactagttgatcgatccacaccatgcattcaatgtgacagt |
42332158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 42332200 - 42332252
Alignment:
| Q |
391 |
ttcaattcctcatccacagcgcgtaacatatgaagcatgtgctgaagtttctt |
443 |
Q |
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| T |
42332200 |
ttcaattcctcatccacagcgcgtaacatatgaagcatctgctgaagtttctt |
42332252 |
T |
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