View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_26 (Length: 435)
Name: NF1763_low_26
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 37592518 - 37592200
Alignment:
| Q |
1 |
atagcagcattcattgcagtgtttccaatatatagacactgtcactatcataatcatcaatactactaactaacaaggacctaaaattgtactacgcaca |
100 |
Q |
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| T |
37592518 |
atagcagcattcattgcagtgtttccaatatatagacactgtcactatcataatcatcaatactactaactaacaaggacctaaaattgtactacgcaaa |
37592419 |
T |
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| Q |
101 |
cagataggaacgaaaatggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaagcattgataggggaacacaacaaccaacttgtcc |
200 |
Q |
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| T |
37592418 |
cagataggaacgaaaatggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaaccattgataggggaacacaacaaccaacttgtcc |
37592319 |
T |
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| Q |
201 |
atgcaaacaaagatcatcattatccatggatgctttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcactt |
300 |
Q |
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| T |
37592318 |
atgcaaacaaagatcatcattatccatggatgctttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcactt |
37592219 |
T |
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| Q |
301 |
ctttctctgtaaatcagca |
319 |
Q |
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| T |
37592218 |
ctttctctgtaaatcagca |
37592200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 116 - 319
Target Start/End: Original strand, 37461886 - 37462085
Alignment:
| Q |
116 |
atggaaatcaaagaggaaatggaggatggtaagcagaaaggaatgagagaagcattgataggggaacacaacaaccaacttgtccatgcaaacaaagatc |
215 |
Q |
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| T |
37461886 |
atggatatcaaagaggatgtggaaggtggcaaacagaaaggaataagagaaccattgataggtgaacaaaacaaccaacttgtccatgcaaacaaagatc |
37461985 |
T |
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| Q |
216 |
atcattatccatggatgctttatttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtcttcacttctttctctgtaaatc |
315 |
Q |
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| T |
37461986 |
atcatcatccatggatggtttacttcaccacattcattgcagtttgtggttcttatgaatttggtgcttgtgtaagtctttacttct----ctgtaaatc |
37462081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 37592146 - 37592103
Alignment:
| Q |
373 |
ccagactggatattcatctccagctcaagatgctatcaggaggg |
416 |
Q |
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| T |
37592146 |
ccagactgggtattcatctccagctcaagatgctatcaggaggg |
37592103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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