View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_28 (Length: 428)
Name: NF1763_low_28
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 37715227 - 37715603
Alignment:
| Q |
18 |
attcacaacaaatactcaacttaagagtaccattcacatcaaatactcatattttcatttttgaacttgcaaatcataaccattttgaacttgcaaatgg |
117 |
Q |
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| T |
37715227 |
attcacaacaaatactcaacttaagagtaccattcacatcaaatactcatattttcatttttgaacttgcaaatcataaccattttgaacttgcaaatgg |
37715326 |
T |
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| Q |
118 |
caggtataggtagtatattctcattttcatcagtgagaggatcttcttcttccaagcttcgaccatggcgaaaatgttcgaagcacattaggcagcagaa |
217 |
Q |
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| T |
37715327 |
caggtataggtagtatattctcattttcatcagtgagaggatcttcttcttccaagcttcgaccatggcgaaaatgttcgaagcacattaggcagcagaa |
37715426 |
T |
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| Q |
218 |
gacacggctttacattatttggagatgcactgtcttactcttgtgctggcatgagtaaccaatgtatgtttcaggttcatggtgccactgcatatctata |
317 |
Q |
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| T |
37715427 |
gacacggctttacattatttggagatgcactgtcttactcttgtgctggcatgagtaaccaatgtatgtttcatgttcatggtgccactgcatatctata |
37715526 |
T |
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| Q |
318 |
gttggtaccttaattaacaaattagacgcgataatattaattactaatggctagcttttatcgtaagttatcactag |
394 |
Q |
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| T |
37715527 |
gttggtaccttaattaacaaattagacgcgataatattaattactaatggctagcttttatcgtaagttatcactag |
37715603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 87 - 320
Target Start/End: Original strand, 37708934 - 37709178
Alignment:
| Q |
87 |
caaatcataaccattttg-aacttgcaaatggcaggtataggtagtatattctcattttcatcagtgagaggatctt------cttcttccaagcttcga |
179 |
Q |
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| T |
37708934 |
caaatcataaacattttttaacttgcaaatggcaggtataagtagtattttctcattctcatccatgagaggatcttcttcttcttcttccaagcttcga |
37709033 |
T |
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| Q |
180 |
ccatggcgaaaatgttcgaagcacattaggcagcagaagacacggctttacattatttggagatgcactgtcttactcttgtgctggcatgagt----aa |
275 |
Q |
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| T |
37709034 |
ccatggcgaaaatgttcgaagcacattcggcagcaaaagacacggctttacattatttggagatgcactgtcttactcttgtgctggcatgagtaaacaa |
37709133 |
T |
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| Q |
276 |
ccaatgtatgtttcaggttcatggtgccactgcatatctatagtt |
320 |
Q |
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| T |
37709134 |
gcaatgtatgtgtcatgttcttggcgccactgcatatatatagtt |
37709178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 32209342 - 32209281
Alignment:
| Q |
205 |
ttaggcagcagaagacacggctttacattatttggagatgcactgtcttactcttgtgctgg |
266 |
Q |
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|||||||||||| | || |||||||||| || |||||||||||||| ||||| || |||||| |
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| T |
32209342 |
ttaggcagcagagggcaaggctttacataatatggagatgcactgttttactattatgctgg |
32209281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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