View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_31 (Length: 422)
Name: NF1763_low_31
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 2811633 - 2812030
Alignment:
| Q |
18 |
attggaacacattctatttttggtgcttttgtttatggattagtgattccaaatggaccacttggagctgcaataattgaaaagctagaagactttgttt |
117 |
Q |
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| T |
2811633 |
attggaacacattctatttttggtgcttttgtttatggattagtgattccaaatggaccacttggagctgcaataattgaaaagctagaagactttgttt |
2811732 |
T |
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| Q |
118 |
cggggcttttactccctcttttttatgctattagtggacttaagactaatattaacttattcaataaaggtggttcgtgggcatttgtattgacaatcgt |
217 |
Q |
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| T |
2811733 |
cggggcttttactccctcttttttatgctattagtggacttaagactaatattaacttattcaataaaggtggttcgtgggcatttgtattgacaatcgt |
2811832 |
T |
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| Q |
218 |
tcctttcgcttgtttgggcaagatcgtcgggactgttattgtatcaatccttttcgacttaccagctcgcgatggtattgttcttggtttacttatgaac |
317 |
Q |
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| T |
2811833 |
tcctttaacttgtttgggcaagatcatcgggactgttattgtatcaatccttttcgacttaccagctcgcgatggtattgttcttggtttacttatgaac |
2811932 |
T |
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| Q |
318 |
accaaaggtcttattgaaatgattgtgctcaatattgggagggaacaaaaggtacacaaactcacttttagtatcacaatatatatattgagaataat |
415 |
Q |
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| T |
2811933 |
accaaaggtcttattgaaatgattgtgctcaatattgggagggaacaaaaggtacacaaactcacttttagtatcacaatatatatattgagaataat |
2812030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 39237741 - 39237595
Alignment:
| Q |
18 |
attggaacacattctatttttggtgcttttgtttatggattagtgattccaaatggaccacttggagctgcaataattgaaaagctagaagactttgttt |
117 |
Q |
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| T |
39237741 |
attggaactcattctgtttttggagcttttgtgtttggtttgattattccaactggaccacttggttttgctcttattgaaaagcttgaggactttgttt |
39237642 |
T |
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| Q |
118 |
cggggcttttactccctcttttttatgctattagtggacttaagact |
164 |
Q |
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| T |
39237641 |
ctggacttttgcttcctctcttttttgcaattagtggcctaaagact |
39237595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 44055587 - 44055517
Alignment:
| Q |
300 |
cttggtttacttatgaacaccaaaggtcttattgaaatgattgtgctcaatattgggagggaacaaaaggt |
370 |
Q |
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| T |
44055587 |
cttggcttactcatgaacactaaaggactagttgaaatgattgtgctcaatgttggaaaggaccaaaaggt |
44055517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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