View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_35 (Length: 391)
Name: NF1763_low_35
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_35 |
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| [»] scaffold0628 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 55074457 - 55074852
Alignment:
| Q |
1 |
aacactaattctaccaaatataaaaatttgtgttcagtctttaactcaattttcacgcatgttccaacatagatattaaaatag-aattgagtctccacn |
99 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
55074457 |
aacactaattctaccaaatataaaaatttgtgtttagtctttaactcaatttttacgcatgttccaacatagatattaaaatagcaattgagcctccact |
55074556 |
T |
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| Q |
100 |
nnnnnnnnnnnnn-----gagcaattgagcctccacttt-------atgtttttgaaacaagatataaatgcctcaa----cagtcatgagtctgctcat |
183 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
55074557 |
ttttttttttttttttttgagcaattgagcctccactttctagcttatgtttttgaaacaagatataaatgcctctataaccagtcatgagtctgctcat |
55074656 |
T |
|
| Q |
184 |
tgacctatcttttcataattaaattatattgtagaacaaggtataggttgtgta----tattgtcaaagtttcaatcagaacaaacttttgtgtcatcca |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55074657 |
tgacctatcttttcataattaaattatattgtagaacaaggtataggttgtgtacgtatattgtcaaagtttcaatcagaacaaacttttgtgtcatcca |
55074756 |
T |
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| Q |
280 |
gatatgtcttatgagatataaaaacatttcagggcctccacctaatagcttaatcttttaggatatgtggtctttatcagaatcagaagagatgtt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55074757 |
gatatgtcttatgagatataaaaacatttcagggcctccacctaatagcttaatcttttaggatatgtggtctttatcagaatcagaagagatgtt |
55074852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0628 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0628
Description:
Target: scaffold0628; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5808 - 5877
Alignment:
| Q |
1 |
aacactaattctaccaaatataaaaatttgtgttcagt-ctttaactcaattttcacgcatgttccaaca |
69 |
Q |
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| T |
5808 |
aacactagttctaccaaatatgagaatttgtgtttagtattttaactcaatttccacacatgttccaaca |
5877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 2759168 - 2759138
Alignment:
| Q |
40 |
tttaactcaattttcacgcatgttccaacat |
70 |
Q |
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| T |
2759168 |
tttaactcaattttcacgcatgttccaacat |
2759138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2862495 - 2862426
Alignment:
| Q |
1 |
aacactaattctaccaaatataaaaatttgtgttcagtcttt-aactcaattttcacgcatgttccaaca |
69 |
Q |
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||||||||||||||||||| | | ||||||||| ||| ||| ||||||||||| || |||||||||||| |
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| T |
2862495 |
aacactaattctaccaaatgtgagaatttgtgtctagttttttaactcaatttttacacatgttccaaca |
2862426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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