View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_36 (Length: 383)
Name: NF1763_low_36
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 49618111 - 49617813
Alignment:
| Q |
16 |
gaatctatgtagcagaacaacgtgttcaaacttctctcagcacgttggagatgttccatgttttgaaggtgggggtggtgtcggtggtgaaaggggccag |
115 |
Q |
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| T |
49618111 |
gaatctatgtagcagaacaacgtgttcaaacttctctcagcacgttggagatgttccatgttttgaaggtgggggtggtgacggtggtgaaaggggccag |
49618012 |
T |
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| Q |
116 |
tggaaatgagtttggggtgtatgcatcttggttgagacagtgaatattagagtgaagatgtgacaaattaattattgagattccacaagtacttcatgca |
215 |
Q |
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| T |
49618011 |
tggaaatgagtttggggtgtatgcatcttggttgagacagtgaatattagagtgaagatgtgactgattaattattgagattccacaagtacttcatgca |
49617912 |
T |
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| Q |
216 |
aaatcactgtacatgaaattgcagtttcaatctaaaacaacaaacaaaacaaagataccattgaagcaacataaatcggtaataattattacaatagtt |
314 |
Q |
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| T |
49617911 |
aaatcactgtacatgaaattgcagtttcaatctaaaacaacaaacaaaacaaagataccattgaagcaacataaatcggtaataattattacaatagtt |
49617813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 49617395 - 49617335
Alignment:
| Q |
314 |
tcatggtacggagctttgtaaataggggcaagttgtgacaacttaatatcgtcagaataat |
374 |
Q |
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| T |
49617395 |
tcatggtacggagctttgtaaataggggcaagttgtgacaacttaatatcgtcagaataat |
49617335 |
T |
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