View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_38 (Length: 379)
Name: NF1763_low_38
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 217 - 367
Target Start/End: Original strand, 41625870 - 41626020
Alignment:
| Q |
217 |
gaaagagggattggcggctatgatactccttcctagcatcttccttagaacaaagaaagaatcatttatgaattctatataacaaagctgtgactccaat |
316 |
Q |
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| T |
41625870 |
gaaagagggattggcggctatgatactccttcctagcatcttccttagtacaaagaaagaatcatttatgaattctatataacaaagctgtgactccaat |
41625969 |
T |
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| Q |
317 |
tcatcaaacaatgttagctcctcttcagttgttagatggcaacatttccta |
367 |
Q |
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| T |
41625970 |
tcatcaaacaatgttagctcctcttcagttgttagatagcaacttttccta |
41626020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 41625654 - 41625802
Alignment:
| Q |
1 |
tatatattgagataataataccaggttgtaacaaatgacttggcgaacaagggtgcacctgcatctgactcttccacatgtttgaccacttcatattatt |
100 |
Q |
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| T |
41625654 |
tatatattgatataataataacaggttgtgacgaatgacttggggaacaagggaaaacctgcatctgactcttgcacatgtttgaccacttcatattatt |
41625753 |
T |
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| Q |
101 |
tcatatatttctaaaacatgaaaaatcaaagactagatcacccagcact |
149 |
Q |
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| T |
41625754 |
tcatatatttctaaaacatgaaaaatcaaagactagatcacccagcact |
41625802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 41622902 - 41622981
Alignment:
| Q |
217 |
gaaagagggattggcggctatgatactccttcctagcatcttccttagaacaaagaaagaatcatttatgaattctatat |
296 |
Q |
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| T |
41622902 |
gaaagaggggttggcggctatgatactccttcctagcagcttcctcagtacaaagaaagaatcatttatgaattctatat |
41622981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 372
Target Start/End: Original strand, 41619702 - 41619858
Alignment:
| Q |
228 |
tggcggctatgatac---tccttcctagcatcttccttagaacaaa-gaaagaatcatttatgaa-------ttctatataacaaag-ctgtgactccaa |
315 |
Q |
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| T |
41619702 |
tggcggctatgatacccttccttcctagcagcttccttagtacaaaagaaagaatcatttatgaataataatttatatataacaaagagtatgactccaa |
41619801 |
T |
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| Q |
316 |
ttcatcaaacaatgttagctcctcttcagttgttagatggcaacatttcctatgctt |
372 |
Q |
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| T |
41619802 |
atcatccaacaatgctagttcctcttcacttgttagatatcaacttttcctaggctt |
41619858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 41619443 - 41619511
Alignment:
| Q |
31 |
acaaatgacttggcgaacaagggtgcacctgcatctgactcttccacatgtttgaccacttcatattat |
99 |
Q |
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| T |
41619443 |
acaaatgacttggggaacaaggactcacctgcatctgacacgtgcacatgtttgaccactttatattat |
41619511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 41622323 - 41622376
Alignment:
| Q |
15 |
ataataccaggttgtaacaaatgacttggcgaacaagggtgcacctgcatctga |
68 |
Q |
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| T |
41622323 |
ataataacaggttttgacgaatgacttggggaacaagggtgcacctgcatctga |
41622376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 41622985 - 41623026
Alignment:
| Q |
287 |
aattctatataacaaagctgtgactccaattcatcaaacaat |
328 |
Q |
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| T |
41622985 |
aattctatataacaaagttgtgactccaagtcatcaaacaat |
41623026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 41622781 - 41622833
Alignment:
| Q |
97 |
tatttcatatatttctaaaacatgaaaaatcaaagactagatcacccagcact |
149 |
Q |
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| T |
41622781 |
tatttcatatatttttagaacatgaaaaatcaaactctagatcacacagcact |
41622833 |
T |
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