View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_39 (Length: 378)
Name: NF1763_low_39
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 35628500 - 35628147
Alignment:
| Q |
16 |
attaacaatcaaaataattatggatctaaacatacaatgtacagtgctgtaatctcctttgtttttatgaatgcaaataattaatggatgtaaacataca |
115 |
Q |
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| T |
35628500 |
attaacaatcaaaataattatggatctaaacatacaatgtacagtgctgtaatctcctttgtttttatgaatgcaaataattaatggatgtaaacataca |
35628401 |
T |
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| Q |
116 |
atgtactggtatgattctttgnnnnnnnggtatgatcctttgttttcggtatgttgtttctcatagannnnnnnnctttcaacaaaggtggttatcatat |
215 |
Q |
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| T |
35628400 |
atgtactggtatgattctttgtttttttggtatgatcctttgttttcggtatgttgtttctcatagattttttttctttcaacaaaggtggttatcatat |
35628301 |
T |
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| Q |
216 |
ttaagacattgtcaaatacaaaatgtaaccgctttttaacttgtatttaaatctagagctgtccaattaacttgtttgatcagatctgctctagcccgat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
35628300 |
ttaagacattgtcaaatacaaaatgtaaccgctttttaacttgtatttaaatctagagctgttaaattaacttgtttgatcagatctgctctagtccgat |
35628201 |
T |
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| Q |
316 |
tgagccaataacacaaatgggctagattaagttgactcactttttatttctttt |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35628200 |
tgagccaataacacaaatgggctagattaagttgactcactttttatttctttt |
35628147 |
T |
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