View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_4 (Length: 934)

Name: NF1763_low_4
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_4
NF1763_low_4
[»] chr5 (19 HSPs)
chr5 (35-921)||(14820297-14821160)
chr5 (153-323)||(19343551-19343721)
chr5 (174-323)||(39058477-39058626)
chr5 (153-323)||(26724110-26724281)
chr5 (173-301)||(38948544-38948672)
chr5 (162-323)||(5159485-5159646)
chr5 (153-330)||(36235746-36235923)
chr5 (153-313)||(16089694-16089854)
chr5 (272-330)||(5459043-5459101)
chr5 (164-240)||(15070000-15070076)
chr5 (195-323)||(38607295-38607423)
chr5 (224-323)||(21114568-21114667)
chr5 (158-233)||(30403572-30403647)
chr5 (153-207)||(6502282-6502336)
chr5 (257-323)||(15069930-15069996)
chr5 (171-271)||(22860975-22861072)
chr5 (260-301)||(4294818-4294859)
chr5 (153-282)||(5459137-5459265)
chr5 (270-323)||(16089653-16089706)
[»] chr8 (21 HSPs)
chr8 (164-323)||(39344582-39344741)
chr8 (153-323)||(12596853-12597023)
chr8 (164-323)||(24916049-24916206)
chr8 (178-323)||(26938628-26938773)
chr8 (164-323)||(26938876-26939032)
chr8 (153-275)||(32796980-32797102)
chr8 (153-301)||(10467482-10467631)
chr8 (175-323)||(33038214-33038362)
chr8 (153-323)||(42023985-42024154)
chr8 (160-323)||(17156980-17157146)
chr8 (208-323)||(17153537-17153652)
chr8 (164-323)||(17219713-17219875)
chr8 (172-323)||(24292198-24292349)
chr8 (217-321)||(16483745-16483848)
chr8 (203-323)||(8026016-8026136)
chr8 (267-323)||(8026216-8026272)
chr8 (217-292)||(30743922-30743997)
chr8 (237-283)||(2414910-2414956)
chr8 (224-323)||(43651359-43651458)
chr8 (250-300)||(41828016-41828066)
chr8 (297-334)||(41590719-41590756)
[»] chr6 (16 HSPs)
chr6 (172-323)||(10516588-10516738)
chr6 (178-323)||(3807068-3807213)
chr6 (153-323)||(6197810-6197979)
chr6 (153-323)||(17957029-17957199)
chr6 (193-320)||(3336025-3336152)
chr6 (217-323)||(25042897-25043002)
chr6 (217-323)||(4405838-4405943)
chr6 (153-253)||(4254536-4254636)
chr6 (215-323)||(12611794-12611902)
chr6 (200-323)||(24672269-24672392)
chr6 (192-315)||(30465195-30465318)
chr6 (153-213)||(14198537-14198597)
chr6 (237-320)||(4409537-4409619)
chr6 (224-323)||(10311637-10311736)
chr6 (249-300)||(17141881-17141932)
chr6 (81-115)||(34187672-34187706)
[»] chr4 (17 HSPs)
chr4 (145-323)||(6449661-6449839)
chr4 (153-328)||(40390884-40391058)
chr4 (144-315)||(15025785-15025955)
chr4 (215-332)||(10573942-10574059)
chr4 (197-301)||(6156049-6156152)
chr4 (244-323)||(15882221-15882300)
chr4 (153-319)||(38377811-38377964)
chr4 (164-323)||(31049984-31050144)
chr4 (263-323)||(40391085-40391145)
chr4 (269-327)||(784192-784250)
chr4 (81-118)||(38377820-38377857)
chr4 (267-323)||(784000-784056)
chr4 (153-233)||(784088-784168)
chr4 (153-213)||(14806451-14806511)
chr4 (200-323)||(22593330-22593453)
chr4 (191-292)||(26081196-26081297)
chr4 (266-323)||(43914042-43914099)
[»] chr3 (13 HSPs)
chr3 (153-323)||(34359330-34359500)
chr3 (153-333)||(39340760-39340938)
chr3 (153-323)||(50334632-50334804)
chr3 (153-323)||(44446851-44447021)
chr3 (154-273)||(45743779-45743898)
chr3 (153-323)||(28769505-28769673)
chr3 (203-323)||(20336780-20336900)
chr3 (222-331)||(13899456-13899564)
chr3 (192-323)||(20314887-20315018)
chr3 (144-271)||(22853361-22853489)
chr3 (196-305)||(17268848-17268957)
chr3 (224-323)||(9766052-9766151)
chr3 (203-269)||(16876437-16876503)
[»] chr1 (14 HSPs)
chr1 (153-320)||(20985930-20986099)
chr1 (153-323)||(33752959-33753128)
chr1 (175-323)||(50919301-50919448)
chr1 (157-323)||(16545413-16545578)
chr1 (197-301)||(13392831-13392935)
chr1 (197-323)||(25506585-25506709)
chr1 (224-320)||(29307657-29307753)
chr1 (164-231)||(37470916-37470983)
chr1 (276-327)||(16545318-16545369)
chr1 (227-317)||(3891451-3891541)
chr1 (276-323)||(1236708-1236755)
chr1 (226-316)||(37471004-37471094)
chr1 (294-323)||(23278793-23278822)
chr1 (203-304)||(29102855-29102956)
[»] chr2 (22 HSPs)
chr2 (153-323)||(34904010-34904180)
chr2 (187-318)||(6191094-6191225)
chr2 (172-301)||(855586-855715)
chr2 (164-323)||(35954224-35954383)
chr2 (153-319)||(31994722-31994888)
chr2 (164-319)||(8794580-8794731)
chr2 (164-323)||(30641034-30641194)
chr2 (153-323)||(27694513-27694683)
chr2 (153-323)||(39293110-39293279)
chr2 (164-301)||(10077626-10077764)
chr2 (219-323)||(24490617-24490721)
chr2 (173-323)||(29242582-29242730)
chr2 (208-293)||(30632591-30632676)
chr2 (208-293)||(30669060-30669145)
chr2 (221-322)||(36773985-36774085)
chr2 (262-323)||(37284290-37284351)
chr2 (164-323)||(434530-434690)
chr2 (153-213)||(21595025-21595085)
chr2 (262-323)||(11711255-11711316)
chr2 (262-323)||(17448896-17448957)
chr2 (145-222)||(33912690-33912766)
chr2 (262-323)||(43910163-43910224)
[»] chr7 (13 HSPs)
chr7 (164-323)||(25067651-25067810)
chr7 (153-323)||(27567663-27567835)
chr7 (164-323)||(11297757-11297917)
chr7 (218-318)||(34471227-34471327)
chr7 (153-323)||(20132053-20132223)
chr7 (153-301)||(28098553-28098700)
chr7 (167-269)||(13009377-13009480)
chr7 (192-315)||(30851674-30851797)
chr7 (153-289)||(12925246-12925382)
chr7 (237-323)||(21367169-21367255)
chr7 (192-283)||(28565079-28565170)
chr7 (249-323)||(28555280-28555354)
chr7 (253-323)||(28545217-28545287)
[»] scaffold0720 (1 HSPs)
scaffold0720 (192-323)||(5503-5634)
[»] scaffold0020 (1 HSPs)
scaffold0020 (164-323)||(152180-152339)
[»] scaffold0233 (1 HSPs)
scaffold0233 (153-330)||(16922-17099)
[»] scaffold0005 (2 HSPs)
scaffold0005 (153-318)||(253745-253909)
scaffold0005 (153-213)||(33216-33276)
[»] scaffold0478 (2 HSPs)
scaffold0478 (208-323)||(8599-8714)
scaffold0478 (244-323)||(3221-3300)
[»] scaffold1911 (1 HSPs)
scaffold1911 (208-301)||(2-95)
[»] scaffold0264 (1 HSPs)
scaffold0264 (216-301)||(19788-19873)


Alignment Details
Target: chr5 (Bit Score: 652; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 35 - 921
Target Start/End: Original strand, 14820297 - 14821160
Alignment:
Q  35 cataaataatactacagttattttattaagagttaaatannnnnnnagtccttacaaaattacaaatttttaagtttagtccctgcnnnnnnnnnntcac 134  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||| ||           ||||    
T  14820297 cataaataatactacagttattttattaagagttaaatatttttttagtccttacaaaattacaaattttcaagtttagtccatg-aaaaaaaaaatcac 14820395  T
Q  135 ctttcttctctatttatatttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactac 234  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||| | ||||||||||||||||    
T  14820396 ctttcttctctatttatatttataaggactattttgaaggactaaaagtgaccattttttataaaaagtttttaaaatatggattatttttacaaactac 14820495  T
Q  235 attattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttacccttttatta 334  Q
    |||||||||||||| ||||| ||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||        
T  14820496 attattatagagggttaaaattaccactaaaattttgtaaggactaaacttgaaaacttatgattttataggaactaaaaacatattta-cctttt---- 14820590  T
Q  335 attatattaatctatctcaattgagatatcaaaatctattaattgacacaaacgggatttaccttcaaaatgcaaatacaaacatctatcatcaattgca 434  Q
        |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14820591 ----tattaat---------------tatcaaaatctattaattgacacaaacgggatttaccttcaaaatgcaaatagaaacatctatcatcaattgca 14820671  T
Q  435 ttacaagacaaatatttgacatggcgtcaaatcacattcacaagtattctttttactcggataatgtttatcctacattgggaggaaagatttatcttct 534  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14820672 ttacaagacaaatatttggcatggcgtcaaatcacattcacaagtattctttttactcggataatgtttatcctacattgggagaaaagatttatcttct 14820771  T
Q  535 tcatctttacttgtggcttaagaacaatgtaacaaactattcattcagattgacaccaaatatagagataagaaagtagtgtcaataacaaacccaatgc 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820772 tcatctttacttgtggcttaagaacaatgtaacaaactattcattcagattgacaccaaatatagagataagaaagtagtgtcaataacaaacccaatgc 14820871  T
Q  635 tgctattaactcacatttcgctttctttatccttttcatgtgtgctttgcatatatgctcccttcaaattcattttcattcccttgtatgtttaggcaca 734  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820872 tgctattaactcacatttcgctttctttatccttttcatgtgtgctttgcatatatgctcccttcaaattcattttcattcccttgtatgtttaggcaca 14820971  T
Q  735 cac--atgttactcttattcagcaccattttcatgcagaggggcaaagcaaaataagtccaatctctccaatcatattttagttacattggtactctctt 832  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820972 cacatatgttactcttattcagcaccattttcatgcagaggggcaaagcaaaataagtccaatctctccaatcatattttagttacattggtactctctt 14821071  T
Q  833 ttcctccacctctccaattatttactgtttgatacatgtctttacaattttcaatttttacttgtttctggtggtagaaatgacatttg 921  Q
    || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14821072 ttactccacctctacaattatttactgtttcatacatgtctttacaattttcaatttttacttgtttctggtggtagaaatgacatttg 14821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 19343721 - 19343551
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||||||| || |||| |||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  ||| ||||    
T  19343721 tttataaggactagtttggaggactaaaattatctattttttgtaaaaagtttttaaaatatgaactatttttacaaactacaatattttttaggactaa 19343622  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || || |||||||||||||||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  19343621 aattatcactaaaattttatagagactaaacttaaaaactcatgattttgtaggtactaaaaacatattta 19343551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 174 - 323
Target Start/End: Original strand, 39058477 - 39058626
Alignment:
Q  174 gactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttata 273  Q
    ||||||||||||||||| ||||||||||||||| |||||| | |||||| |||||||||||| | |||| |||| |||||| ||||| ||||||||||||    
T  39058477 gactaaaagtgtccattgtttgtaaaaagttttcaaaataaggactattcttacaaactacaatgttatggaggactaaaattaccattaaaattttata 39058576  T
Q  274 gggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||  |||| |||||||||| |||||||||||| | ||||||||||||||    
T  39058577 ggggttaaacttaaaaacttgtgattttatagggattaaaaacatattta 39058626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 26724281 - 26724110
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggcta 251  Q
    |||||||||| ||||||| |||||||||||| |||||| ||| |||||||||||| |||||| | ||| || ||| ||| |||| |  ||| || | |||    
T  26724281 tttataaggactattttggaggactaaaagtatccatttttttgtaaaaagttttcaaaatagggactgttcttataaattacaattctatggacgacta 26724182  T
Q  252 aaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||| ||||| ||||||||||||||||||||| |  ||||||  ||||||| |||| ||||||||||||||||    
T  26724181 aaattaccattaaaattttatagggactaaactcgaaaactcgtgattttgtagggactaaaaacatattta 26724110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 38948672 - 38948544
Alignment:
Q  173 ggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttat 272  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||   |||||  ||| |||||| || || |||||||||||    
T  38948672 ggactaaaagtgtccattttttgtaaaaagtttttaaaatatgaactaatcttataaactactaaattatgaaggactaaaattatcattaaaattttat 38948573  T
Q  273 agggactaaaattaaaaacttatgatttt 301  Q
    |  ||||||| || ||||||| |||||||    
T  38948572 atagactaaatttgaaaacttgtgatttt 38948544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 162 - 323
Target Start/End: Original strand, 5159485 - 5159646
Alignment:
Q  162 attattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccac 261  Q
    ||||||||| ||||||| |||| |||||| ||||| |||||||||||||||| | |||||||||| |||||| | || | |  |||  ||||| ||| |     
T  5159485 attattttggaggactacaagtatccattttttgttaaaagtttttaaaataaggactatttttagaaactataataatttttaggattaaaattactat 5159584  T
Q  262 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||||| |||||||  |||||||| |||||||  |||| ||||||||||| ||||    
T  5159585 taaaattttatagagactaaacctaaaaactcatgatttggtagggactaaaaacattttta 5159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 153 - 330
Target Start/End: Complemental strand, 36235923 - 36235746
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||||||| ||||||| |||| ||||| | | |||| ||| |||||||||||||||||  | ||| || |||||||||| | |||||| |||||||||    
T  36235923 tttataaggactattttggaggaataaaaatattcattttttataaaaagtttttaaaatggggactgttcttacaaactaaaatattatggagggctaa 36235824  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctttt 330  Q
    || ||||  |||||||||||||| | |||| || |||||| || |||||  |   ||||| |||||||||| ||||||    
T  36235823 aattacccttaaaattttataggaattaaatttgaaaactcataattttgcatagactaagaacatatttaacctttt 36235746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 153 - 313
Target Start/End: Complemental strand, 16089854 - 16089694
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||  ||||||||||||  ||||| ||||||||||||||| |||| |   |||||| |||||||||| | |||| |  ||| ||||    
T  16089854 tttatagggactattttagaggactaaaagtacccattttttgtaaaaagttttaaaaacagagactattcttacaaactataatattttttaggactaa 16089755  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaa 313  Q
    || ||| | ||||||||||| ||||||||| ||||||||| || | | |||||| ||||||    
T  16089754 aattacaattaaaattttattgggactaaacttaaaaactcataactatatagggactaaa 16089694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 5459101 - 5459043
Alignment:
Q  272 tagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctttt 330  Q
    ||||||||||| |||||||||||| |||||||||  |||||||||||||||| ||||||    
T  5459101 tagggactaaacttaaaaacttataattttatagagactaaaaacatatttaacctttt 5459043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 15070076 - 15070000
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattatt 240  Q
    |||||||||||||||||| | |||||| ||||||||||||||| |||||    |||||| |||||||||||| ||||    
T  15070076 tattttgaaggactaaaaatatccattttttgtaaaaagttttcaaaatcgagactattattacaaactacaatatt 15070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 38607423 - 38607295
Alignment:
Q  195 gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaactta 294  Q
    |||| ||||||| |||||| | |||||| | | |||||||| ||||||  ||| |||||| ||| | |||||||||||||  |||||| |||||||||      
T  38607423 gtaacaagttttcaaaataaggactattctaaaaaactacaatattatgaaggactaaaattacaattaaaattttatagaaactaaacttaaaaactct 38607324  T
Q  295 tgattttataggaactaaaaacatattta 323  Q
    ||| ||| |||| | ||||||||||||||    
T  38607323 tgagtttttaggtattaaaaacatattta 38607295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 224 - 323
Target Start/End: Complemental strand, 21114667 - 21114568
Alignment:
Q  224 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||| |||||| | || |||||| || || ||||||||| |||  |||||| ||||||  || |||||||||||  ||||||||||||||||    
T  21114667 ttacaaactacaatattatggtggactaaaattatcattaaaattttctagaaactaaacttaaaagtttctgattttatagatactaaaaacatattta 21114568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 30403572 - 30403647
Alignment:
Q  158 aaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaacta 233  Q
    ||||| ||||||| || |||||| ||| ||||| ||||||||||||||||||||||   |||||| ||||||||||    
T  30403572 aaggactattttggagtactaaatgtgcccattttttgtaaaaagtttttaaaataatgactattcttacaaacta 30403647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 6502336 - 6502282
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagttttt 207  Q
    |||||| ||| ||||||| |||||||||||| |||| | ||||||||||||||||    
T  6502336 tttatagggactattttggaggactaaaagtatccaatttttgtaaaaagttttt 6502282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 15069996 - 15069930
Alignment:
Q  257 accactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||| |||||||||| ||||||||||  |||||||| |||||||| ||||   ||||||||||||||    
T  15069996 accattaaaattttacagggactaaacataaaaactcatgattttgtagggcataaaaacatattta 15069930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 22860975 - 22861072
Alignment:
Q  171 aaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttt 270  Q
    ||||||||||  | |||||| |||||||||| ||||||||||| ||   ||| | |||||||||| || |||||||| |||||| ||| | |||||||||    
T  22860975 aaggactaaatatatccattttttgtaaaaactttttaaaatagga---attataacaaactacaatactatagaggactaaaattacaattaaaatttt 22861071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 4294859 - 4294818
Alignment:
Q  260 actaaaattttatagggactaaaattaaaaacttatgatttt 301  Q
    |||||||||||||| |||||||| ||||||| ||||||||||    
T  4294859 actaaaattttataaggactaaacttaaaaatttatgatttt 4294818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 282
Target Start/End: Original strand, 5459137 - 5459265
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||| ||||||| | |||| |||||| ||| |||  |||||| | || ||| ||| |||||| | ||||||  ||| ||||    
T  5459137 tttatagggactattttggaggaataaaagtattcattttttgtagaaaatttaaaaaatagggac-attcttataaactataatattatgaaggactaa 5459235  T
Q  253 aaataccactaaaattttatagggactaaa 282  Q
    |  ||||| |||||||||||||||||||||    
T  5459236 atttaccattaaaattttatagggactaaa 5459265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 16089706 - 16089653
Alignment:
Q  270 tatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||||| ||||||||| || | | |||||| ||||||||||||||||    
T  16089706 tatagggactaaacttaaaaactcataactatatagggactaaaaacatattta 16089653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 39344741 - 39344582
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 263  Q
    ||||||| ||||||||||||||||| | ||| ||||| ||||| ||||||||||||||| |||||||||||| |||||| |||| |||||  ||||| ||    
T  39344741 tattttggaggactaaaagtgtccaatttttttaaaaggttttcaaaatatgaactattcttacaaactacaatattatggaggactaaagttaccatta 39344642  T
Q  264 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||||||| || ||||||| |||||||||| || |||||||||| |||||||    
T  39344641 aaattttatagggacttaatttaaaaatttatgattttgtatgaactaaaaatatattta 39344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 12597023 - 12596853
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||||||||  | |||||| ||||||||| ||||| ||||||   |||| |||||||||||||| |||| | |||| ||||    
T  12597023 tttatagggactattttggaggactaaatatatccattttttgtaaaatgttttcaaaatagagactaattttacaaactacaatattttggaggactaa 12596924  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||||| ||||||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||||    
T  12596923 aattaccattaaaattttatagggactaaacttaaaaacttatgattttgtagagactaaaaacatattta 12596853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 24916049 - 24916206
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 263  Q
    ||||||| |||||||||| | |||||| ||| ||||||||||  |||||| || ||||||||||||||||||| ||| | |||| | |||| ||||| ||    
T  24916049 tattttggaggactaaaaatatccattttttctaaaaagtttccaaaatagga-ctatttttacaaactacat-attttggaggacgaaaattaccatta 24916146  T
Q  264 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||    
T  24916147 aaattttatagggactaaacttaaaaactcatgattttatatggactaaaaacatattta 24916206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 26938628 - 26938773
Alignment:
Q  178 aaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttataggga 277  Q
    ||||||||||||| |||  |||||||||| |||||| | |||||| |||||||||||   ||||| |||| | |||| ||||| ||||||||||||||||    
T  26938628 aaaagtgtccattttttcaaaaaagttttcaaaatagggactattcttacaaactactaaattatggaggacaaaaattaccattaaaattttataggga 26938727  T
Q  278 ctaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||| || |||||||||||||||||||| ||||||| ||||||||    
T  26938728 ctaaacttgaaaacttatgattttatagggactaaaagcatattta 26938773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 26938876 - 26939032
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 263  Q
    ||||||||||||||||||||||||||| | |  |||||||||| |||||| | |||||| |||||||  ||   ||||| |||| |||||| ||||| ||    
T  26938876 tattttgaaggactaaaagtgtccattttata-aaaaagttttcaaaatagggactattcttacaaa--actaaattatggaggactaaaattaccatta 26938972  T
Q  264 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||| ||||||||    
T  26938973 aaattttatagggactaaacttgaaaacttatgattttatagggactaaaagcatattta 26939032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 32797102 - 32796980
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||||||| ||||||| ||||| |||||| || ||| |||||||||||||||||||||||| |||||| |||||||||||| || | |||||| ||||    
T  32797102 tttataaggactattttggaggaccaaaagtatctattttttgtaaaaagtttttaaaatatggactattcttacaaactacaatactttagaggactaa 32797003  T
Q  253 aaataccactaaaattttatagg 275  Q
    || ||| | ||||| ||||||||    
T  32797002 aattactattaaaaatttatagg 32796980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 153 - 301
Target Start/End: Original strand, 10467482 - 10467631
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggcta 251  Q
    |||||| ||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||||| | |||||| ||||||  |||| |||||| ||||  ||    
T  10467482 tttatagggactattttggaggactaaaagtgtccatttttttgtaaaaagttttcaaaatagggactattcttacaagttacaatattatggaggatta 10467581  T
Q  252 aaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 301  Q
    ||| ||||| |||||||||||| ||| |||| ||||||| || |||||||    
T  10467582 aaattaccattaaaattttataaggaataaacttaaaaatttgtgatttt 10467631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 33038362 - 33038214
Alignment:
Q  175 actaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatag 274  Q
    ||||||||| |||||| | |||||||||||||||||||| |||||||| ||||||||| || |||||| ||||  ||||| |  || |||||||| ||||    
T  33038362 actaaaagtatccattttctgtaaaaagtttttaaaataggaactattcttacaaactgcaatattatggaggattaaaattttcattaaaatttaatag 33038263  T
Q  275 ggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    | |||||| ||||||  | ||| |||| |||| ||||||||||| ||||    
T  33038262 gaactaaacttaaaagttgatgtttttgtagggactaaaaacattttta 33038214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 42023985 - 42024154
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||||||||||||| |||  |||||||||||  ||| ||||| | |||||| |||||| ||||| |||| | |||| ||||    
T  42023985 tttatatggactattttggaggactaaaagtgtacatattttgtaaaaagaattttaaatagggactattattacaa-ctacaatattttggaggactaa 42024083  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || || || ||||||||||| ||||||||| | |||||||  ||||||| || | |||||| |||||||||    
T  42024084 aattagcattaaaattttatggggactaaactcaaaaactcgtgattttgtaaggactaaacacatattta 42024154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 160 - 323
Target Start/End: Original strand, 17156980 - 17157146
Alignment:
Q  160 ggattattttgaaggactaaaagtgtccattatttg---taaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaat 256  Q
    ||||||| ||| |||||||||||| |||||| |||    || | |||||| |||||| |  ||||||| |||||||| | |||| | |||| |||||| |    
T  17156980 ggattatcttggaggactaaaagtatccatttttttgtatatatagttttcaaaataggggctattttaacaaactaaaatattttggaggactaaaatt 17157079  T
Q  257 accactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||| |||||||| |||||||||||  ||||||| | |||||||| |||| ||||||||||||||||    
T  17157080 accattaaaatttcatagggactaagtttaaaaaatcatgattttgtagggactaaaaacatattta 17157146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 17153652 - 17153537
Alignment:
Q  208 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttatagga 307  Q
    |||||| | |||||||| |||||||  | |||| | |||| |||||| ||||| |||||||| |||||||||||  ||||||||| |||||||| ||||     
T  17153652 aaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtaggg 17153553  T
Q  308 actaaaaacatattta 323  Q
    ||||||||||||||||    
T  17153552 actaaaaacatattta 17153537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 17219713 - 17219875
Alignment:
Q  164 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatag-agggctaaaaataccac 261  Q
    ||||||| |||||||||| | |||||| ||| ||| |||||||| |||||| | ||||||||||||||||| | |||| ||| ||| |||||| |||||     
T  17219713 tattttggaggactaaaaatatccatttttttgtataaagttttcaaaatagggactatttttacaaactaaaatatt-tagaaggactaaaattaccat 17219811  T
Q  262 taaaattttatagggactaa--aattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||| |||||||||||    |||||| || |||||||| |||  ||||||||||||||||    
T  17219812 taaaatttcatagggactaagcgcttaaaatctcatgattttgtagagactaaaaacatattta 17219875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 24292198 - 24292349
Alignment:
Q  172 aggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttta 271  Q
    |||||||||||| |||||| ||| ||||||  |||||||||| | ||| || ||||||||  || | ||||  ||| |||||| ||| | |||||||| |    
T  24292198 aggactaaaagtatccattttttataaaaatcttttaaaatagggactgttcttacaaacatcaattttatgaaggactaaaattacaattaaaatttaa 24292297  T
Q  272 tagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||| || ||| ||| ||||||| |||| |||||||||| |||||    
T  24292298 tagggactaaacttgaaagcttgtgattttttagggactaaaaacacattta 24292349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 16483848 - 16483745
Alignment:
Q  217 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 316  Q
    ||||||||||||||||||| |||| | || | |||||| ||||| |||||||||| |||||||||| ||||||||| |||||| | |||| | | |||||    
T  16483848 actatttttacaaactacaatatt-ttgaagactaaaattaccattaaaattttacagggactaaacttaaaaactcatgattctgtagggattgaaaac 16483750  T
Q  317 atatt 321  Q
    |||||    
T  16483749 atatt 16483745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 323
Target Start/End: Complemental strand, 8026136 - 8026016
Alignment:
Q  203 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttta 302  Q
    ||||||||||| | |||||| |||||||||||   ||||| |||| ||| ||  |||| ||||||||||||| || |||| || |||| || | ||||||    
T  8026136 tttttaaaatagggactattcttacaaactactaaattatggaggactacaatcaccattaaaattttatagagattaaactttaaaatttgtaatttta 8026037  T
Q  303 taggaactaaaaacatattta 323  Q
    |||| |||| |||||||||||    
T  8026036 tagggactataaacatattta 8026016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 8026216 - 8026272
Alignment:
Q  267 ttttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||||||| |||||||||||| ||||| |||| |||||| |||||||||    
T  8026216 ttttatagggactaaacttaaaaacttataattttgtagggactaaatacatattta 8026272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 30743997 - 30743922
Alignment:
Q  217 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaact 292  Q
    ||||||||||||||||||| |||||| |||| |||||| || || |||| ||||||||| |||||| || ||||||    
T  30743997 actatttttacaaactacaatattattgaggactaaaattaacattaaagttttataggtactaaatttgaaaact 30743922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 2414956 - 2414910
Alignment:
Q  237 tattatagagggctaaaaataccactaaaattttatagggactaaaa 283  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  2414956 tattatagaggactaaaattaccattaaaattttatagggactaaaa 2414910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 323
Target Start/End: Complemental strand, 43651458 - 43651359
Alignment:
Q  224 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||| |||| | | || |||||| || || ||||||||| |||  |||||| ||||||  || |||||||||||  ||||||||||||||||    
T  43651458 ttacaaactacaatattgtggtggactaaaattatcattaaaattttctagaaactaaacttaaaagtttctgattttatagatactaaaaacatattta 43651359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 41828066 - 41828016
Alignment:
Q  250 taaaaataccactaaaattttatagggactaaaattaaaaacttatgattt 300  Q
    ||||| ||||| ||||||||||||  ||||||| |||||||||||||||||    
T  41828066 taaaattaccattaaaattttatatcgactaaacttaaaaacttatgattt 41828016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 41590719 - 41590756
Alignment:
Q  297 attttataggaactaaaaacatatttacccttttatta 334  Q
    ||||||||||||||||||||||||||| || |||||||    
T  41590719 attttataggaactaaaaacatatttaaccctttatta 41590756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 5e-37; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 172 - 323
Target Start/End: Original strand, 10516588 - 10516738
Alignment:
Q  172 aggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttta 271  Q
    |||||||||||| |||||  ||||||||||||| ||||| || | |||||| |||||||||||| |||||| ||||||||||| || || || |||||||    
T  10516588 aggactaaaagtatccatattttgtaaaaagttattaaa-tagggactattcttacaaactacaatattatggagggctaaaattatcattacaatttta 10516686  T
Q  272 tagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  10516687 tagggactaaatttaaaaacttatgattttgtagggactaaaaacatattta 10516738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 3807213 - 3807068
Alignment:
Q  178 aaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttataggga 277  Q
    ||||||||| ||| ||||| ||||||||| |||||| | |||||| |||||||||||   ||||| |||| | |||| ||||| ||||||||||||| ||    
T  3807213 aaaagtgtctattttttgttaaaagttttcaaaatagggactattcttacaaactactaaattatggaggacgaaaattaccattaaaattttatagaga 3807114  T
Q  278 ctaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||  |||||||||||||||||||||| ||||||||||||||||    
T  3807113 ctaaacataaaaacttatgattttatagggactaaaaacatattta 3807068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 6197979 - 6197810
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||| |||||||||||||| ||| ||||||||||| ||||||   |||||| |||||||||||   ||||| |||| ||||    
T  6197979 tttatagggactattttggaggaataaaagtgtccattttttctaaaaagttttcaaaatagagactattcttacaaactactaaattatggaggactaa 6197880  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |  ||||| |||||||||||| |||||||| || |||| || |||||||||||| ||||||||||||||||    
T  6197879 atttaccattaaaattttatatggactaaacttgaaaa-ttgtgattttatagggactaaaaacatattta 6197810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 17957199 - 17957029
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| ||||||||| || |||||| ||||||||||||||| |||| |   |||||| |||||||||| | |||| |  ||| ||||    
T  17957199 tttatagggactattttggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaa 17957100  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||| | ||||||||||| || |||||| ||||||||| || ||| |||||| ||||||||||||||||    
T  17957099 aattacaattaaaattttattggaactaaacttaaaaactcataattatatagggactaaaaacatattta 17957029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 3336025 - 3336152
Alignment:
Q  193 ttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaact 292  Q
    |||||||||||||| | ||||  |||||||  |||||| |||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| |    
T  3336025 ttgtaaaaagttttcagaataacaactattcatacaaattacaatattttagaggactaaaattaccactaaaattttatagggtctaaacttaaaaatt 3336124  T
Q  293 tatgattttataggaactaaaaacatat 320  Q
    ||||||||| || | | |||||||||||    
T  3336125 tatgattttgtaaggattaaaaacatat 3336152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 25042897 - 25043002
Alignment:
Q  217 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 316  Q
    |||||| |||||||||||| ||| | ||||| |||||| ||||| |||||||||||| |||||||| || |||||| |||||||| |||| |||||||||    
T  25042897 actattcttacaaactacaatatcacagaggactaaaattaccattaaaattttata-ggactaaatttgaaaactcatgattttgtagggactaaaaac 25042995  T
Q  317 atattta 323  Q
    |||||||    
T  25042996 atattta 25043002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 4405838 - 4405943
Alignment:
Q  217 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 316  Q
    |||||| ||||||| || | |||||| ||||   |||| ||||| ||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||    
T  4405838 actattcttacaaagtagaatattatggaggataaaaattaccattaatattttatagggactaaacttaaaaacttatgattttgtagg-actaaaaac 4405936  T
Q  317 atattta 323  Q
    |||||||    
T  4405937 atattta 4405943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 4254536 - 4254636
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||| ||||| ||||||| |||  |||||||||||||| |||||||| ||||||||||||| | | ||||||||||||||||| |||| | |||| ||||    
T  4254536 tttacaaggactattttggagggttaaaagtgtccattttttgtaaacagtttttaaaatagggattatttttacaaactacagtatttttgaggactaa 4254635  T
Q  253 a 253  Q
    |    
T  4254636 a 4254636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 12611902 - 12611794
Alignment:
Q  215 gaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaa 314  Q
    |||||||| ||| |||||| | | |||| |||| |||||| ||||| |||||||||| ||||| |||| ||||||| | |||||||| |||| |||||||    
T  12611902 gaactattcttataaactataatgttatggaggactaaaattaccattaaaattttagagggattaaatttaaaaattcatgattttgtagggactaaaa 12611803  T
Q  315 acatattta 323  Q
    |||||||||    
T  12611802 acatattta 12611794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 24672392 - 24672269
Alignment:
Q  200 aagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatt 299  Q
    ||||||||||||||   |||||| ||||||| |||| |||||| |||| |||||| ||||| ||||||||||||||||||||| || |||| |  ||| |    
T  24672392 aagtttttaaaatagagactattattacaaattacaatattatggaggactaaaattaccattaaaattttatagggactaaacttgaaaaatcgtgaat 24672293  T
Q  300 ttataggaactaaaaacatattta 323  Q
    || |||  | ||||||||||||||    
T  24672292 ttgtagagattaaaaacatattta 24672269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 30465195 - 30465318
Alignment:
Q  192 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 291  Q
    ||||| |||| ||||||||||| | |||||| ||||||||| || |||||| ||   |||||| ||||| ||||||||||||||  ||||| || |||||    
T  30465195 tttgtcaaaattttttaaaatagggactattcttacaaacttcaatattatggaaaactaaaattaccattaaaattttataggatctaaagttgaaaac 30465294  T
Q  292 ttatgattttataggaactaaaaa 315  Q
    |  | |||||||||| ||||||||    
T  30465295 tcttaattttatagggactaaaaa 30465318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 14198537 - 14198597
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 213  Q
    ||||||||||||||||||||||||||||| | || ||| ||| ||||||||||| ||||||    
T  14198537 tttataaggattattttgaaggactaaaaatatctattttttataaaaagttttaaaaata 14198597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 4409537 - 4409619
Alignment:
Q  237 tattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 320  Q
    |||||| |||| |||||| ||||| | | |||||||||||| |||| |||||||||| ||||||| |||| |||||||||||||    
T  4409537 tattatggaggactaaaattaccattgatattttatagggattaaacttaaaaacttgtgattttgtagg-actaaaaacatat 4409619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 224 - 323
Target Start/End: Complemental strand, 10311736 - 10311637
Alignment:
Q  224 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||| |||| |||| | || | |||||| ||||| |||||||||||||| |||||| || ||||||  |||||||||| | ||| ||||||||||||    
T  10311736 ttacaaattacaatattgttgatgactaaaattaccattaaaattttataggaactaaatttgaaaactcgtgattttataaggacttaaaacatattta 10311637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 17141881 - 17141932
Alignment:
Q  249 ctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattt 300  Q
    |||||| ||||| ||||||||||||  ||||||| |||||||||||||||||    
T  17141881 ctaaaattaccattaaaattttatatcgactaaacttaaaaacttatgattt 17141932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 34187706 - 34187672
Alignment:
Q  81 agtccttacaaaattacaaatttttaagtttagtc 115  Q
    ||||| |||||||||||||||||||||||||||||    
T  34187706 agtccctacaaaattacaaatttttaagtttagtc 34187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 5e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 6449661 - 6449839
Alignment:
Q  145 tatttatatttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatag 244  Q
    ||||| ||||||||| || ||||||||| ||||||||||||||||  |||| ||||||||||||||||| | |||||||||||||||||||||||||||     
T  6449661 tatttgtatttataaagactattttgaaagactaaaagtgtccatcttttgcaaaaagtttttaaaatagggactatttttacaaactacattattataa 6449760  T
Q  245 agggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |   |||||| || || ||||||||||| || | |||| || ||||||  ||||||| |||||| |||||| |||||||    
T  6449761 aaaactaaaattatcattaaaattttatgggcattaaacttgaaaactcgtgattttgtaggaattaaaaatatattta 6449839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 153 - 328
Target Start/End: Complemental strand, 40391058 - 40390884
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| || ||||||||| | |||| ||||||||| ||||| ||||||   |||||| |||||||||||| ||| || |||| ||||    
T  40391058 tttatagggactattttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagactattcttacaaactacaatat-atggaggactaa 40390960  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctt 328  Q
    || || || |||||||||||||| |||||| || |||||| |||||||| |||| |||||||||||||||| ||||    
T  40390959 aattatcattaaaattttataggaactaaacttgaaaactcatgattttgtagggactaaaaacatatttaacctt 40390884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 15025955 - 15025785
Alignment:
Q  144 ctatttatattt-ataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattat 242  Q
    |||||||||||| ||||||| ||||||| ||||||||| || | |||| ||||||||||||||| |||||| | |||||| | |||||||| | |||| |    
T  15025955 ctatttatattttataaggactattttggaggactaaa-gtatacatt-tttgtaaaaagttttcaaaatagggactattatcacaaactataatatttt 15025858  T
Q  243 agagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaa 315  Q
    |||||  ||||| ||||| |||||||||||| | |||||| |||| ||||  ||||||| |||| ||||||||    
T  15025857 agaggattaaaattaccattaaaattttataagaactaaacttaataactcgtgattttgtagggactaaaaa 15025785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 215 - 332
Target Start/End: Complemental strand, 10574059 - 10573942
Alignment:
Q  215 gaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaa 314  Q
    ||||||||||||||||||||| |||||| ||||  ||||| | ||| || | ||||||||  |||||| || ||||||| ||||||| || |||||||||    
T  10574059 gaactatttttacaaactacaatattatggaggattaaaattgccattatatttttatagaaactaaatttgaaaacttgtgattttgtaagaactaaaa 10573960  T
Q  315 acatatttacccttttat 332  Q
    ||||||||| || |||||    
T  10573959 acatatttaaccctttat 10573942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 6156152 - 6156049
Alignment:
Q  197 aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatg 296  Q
    |||||||| | ||||||||||||||||||| |||||||| |||||| || | ||||||| |||| ||||||||||||| | || |||||||||||  |||    
T  6156152 aaaaagttatcaaaatatgaactatttttataaactacaatattatggaagactaaaaaaaccattaaaattttatagagtct-aaattaaaaacacatg 6156054  T
Q  297 atttt 301  Q
    |||||    
T  6156053 atttt 6156049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 15882221 - 15882300
Alignment:
Q  244 gagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||| |||||| ||||| |||||||| |||||||||||  ||||||||| |||||||| |||| ||||||||||||||||    
T  15882221 gaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtagggactaaaaacatattta 15882300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 319
Target Start/End: Complemental strand, 38377964 - 38377811
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||||||||||||| |||| ||| |||||||||||||||||| | |||||| ||| ||| || |             ||||    
T  38377964 tttatagggactattttggaggactaaaagtgttcattttttataaaaagtttttaaaatagggactattcttataaattaga-------------ctaa 38377878  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacata 319  Q
    || ||||| ||||||||||||||||||||| ||||||| || ||||||| || | ||||||||||||    
T  38377877 aattaccattaaaattttatagggactaaacttaaaaatttgtgattttgtaaggactaaaaacata 38377811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 31049984 - 31050144
Alignment:
Q  164 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 262  Q
    ||||||| || ||||||| |||||||| ||| |||||| ||||| ||||||   ||||| ||||||| ||||| |||||| |||  |||||  ||| | |    
T  31049984 tattttggagaactaaaaatgtccatttttttgtaaaaggttttcaaaataatgactatctttacaagctacaatattatcgagaactaaatttacaatt 31050083  T
Q  263 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    | |||||||||||| ||||| |||||||| | |||||||  ||| | ||||||||||||||    
T  31050084 ataattttataggggctaaacttaaaaacatgtgattttgcagggattaaaaacatattta 31050144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 40391085 - 40391145
Alignment:
Q  263 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||| ||| ||||||||||| |||||||||| | |||||||||| ||||||||||||||||    
T  40391085 aaaaatttgtagggactaaacttaaaaacttgtaattttatagggactaaaaacatattta 40391145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 784192 - 784250
Alignment:
Q  269 ttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccct 327  Q
    |||||||||||||| |||||||||  |||||||||| | |||||||||||||| |||||    
T  784192 ttatagggactaaacttaaaaactcgtgattttataaggactaaaaacatattaaccct 784250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 38377820 - 38377857
Alignment:
Q  81 agtccttacaaaattacaaatttttaagtttagtccct 118  Q
    |||||||||||||| |||||||||||||||||||||||    
T  38377820 agtccttacaaaatcacaaatttttaagtttagtccct 38377857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 784056 - 784000
Alignment:
Q  267 ttttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||| |||||||| |||||||||||| |||||||| ||| |||||| |||||||    
T  784056 ttttataaggactaaatttaaaaacttataattttataagaaataaaaatatattta 784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 784088 - 784168
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaacta 233  Q
    |||||| ||| ||||||| | |||||||| | |||||| ||||||||||||||| |||||| | | |||||||| ||||||    
T  784088 tttatacggactattttggatgactaaaaatatccattttttgtaaaaagttttcaaaatagggattatttttagaaacta 784168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 14806511 - 14806451
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 213  Q
    |||||||||||||||||| ||||| |||| | || ||| ||||||||||||||| ||||||    
T  14806511 tttataaggattattttggaggaccaaaaatatctattttttgtaaaaagttttcaaaata 14806451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 22593330 - 22593453
Alignment:
Q  200 aagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatt 299  Q
    |||||||||||| | | |||||||||||||||||   |||| |||| | ||||||  |||| |||||||| ||||  |||||| || ||||||| |||||    
T  22593330 aagtttttaaaaaagggactatttttacaaactatgatattgtagaagactaaaatcaccattaaaatttaatagaaactaaacttgaaaacttgtgatt 22593429  T
Q  300 ttataggaactaaaaacatattta 323  Q
    |  || | || |||||||||||||    
T  22593430 tcgtaaggacaaaaaacatattta 22593453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 26081196 - 26081297
Alignment:
Q  191 atttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaa 290  Q
    |||||| |||||||||||||||| |||||||| ||| |||||  | |||| | ||||  ||||| || || ||||||||||| |  ||||||||| ||||    
T  26081196 atttgtcaaaagtttttaaaataggaactattcttataaactttaatattgtggaggagtaaaattatcaataaaattttatcgaaactaaaattgaaaa 26081295  T
Q  291 ct 292  Q
    ||    
T  26081296 ct 26081297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 43914099 - 43914042
Alignment:
Q  266 attttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||| | |||||| |||||||||  |||||||||||| |||||||| |||||||    
T  43914099 attttatatgaactaaacttaaaaactcgtgattttatagggactaaaaatatattta 43914042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 34359500 - 34359330
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| | |||||||||||||||| | |||||| ||||||||||||||| |||| | | || |||||||||||||| | |||| | ||||  |||    
T  34359500 tttatagggacttttttgaaggactaaaattatccattttttgtaaaaagttttcaaaacagggaccatttttacaaactataatattttggaggaataa 34359401  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||||| |||||||||||| |||||||| ||||||||| |||||||| || | ||||||||||||||||    
T  34359400 aattaccattaaaattttatatggactaaacttaaaaactcatgattttgtaaggactaaaaacatattta 34359330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 153 - 333
Target Start/End: Complemental strand, 39340938 - 39340760
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    ||||||| || ||||||| ||||||||||||   |||| ||||||||||  ||  |||||| | ||||||||||||||||||| |||| | || | ||||    
T  39340938 tttataatgactattttggaggactaaaagtacacattttttgtaaaaaaatt--aaaatagggactatttttacaaactacaatattttggatgactaa 39340841  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttacccttttatt 333  Q
    || ||||| ||||| ||||||||||||||| |||||||||  ||||||| |||| ||| |||||||||||| || ||||||    
T  39340840 aattaccattaaaactttatagggactaaacttaaaaactagtgattttgtagggactcaaaacatatttaaccctttatt 39340760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 50334632 - 50334804
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaa--gtttttaaaatatgaactatttttacaaactacattattatagagggct 250  Q
    |||||| ||| ||||||  |||||||||| | |||||| ||||||||||  || || |||||| |||||| |||||||||||||| |||| | || | ||    
T  50334632 tttatagggactattttagaggactaaaaatatccattttttgtaaaaaaagtattcaaaataggaactaattttacaaactacaatattttggaagact 50334731  T
Q  251 aaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||| || || |||||||||||||||| |||| | ||||||| ||||||||||||  |||||||| |||||||    
T  50334732 aaaattatcattaaaattttatagggattaaagtaaaaaactcatgattttatagagactaaaaatatattta 50334804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 44446851 - 44447021
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| ||||||||||||   |||| ||||||||||||||| |||| |   |||||| |||||||||| | |||| |  ||| ||||    
T  44446851 tttatagggactattttggaggactaaaagtacacattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaa 44446950  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||| | ||||||||||| |||| |||| ||||||||| || ||| |||||| ||||||||||||||||    
T  44446951 aattacaattaaaattttattgggattaaacttaaaaactcataattatatagggactaaaaacatattta 44447021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 45743898 - 45743779
Alignment:
Q  154 ttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaa 253  Q
    |||||| || ||||||| ||||| ||||||||||||| |||||||||||||||||||||| | || ||| |||||||||||| || |||| ||| |||||    
T  45743898 ttataaagactattttggaggacaaaaagtgtccattttttgtaaaaagtttttaaaatagggaccattcttacaaactacactactataaaggactaaa 45743799  T
Q  254 aataccactaaaattttata 273  Q
      ||| | ||||||||||||    
T  45743798 gttactattaaaattttata 45743779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 28769505 - 28769673
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||||||| ||||||| |||| ||||||| || ||| | ||||||||||||||||||||   |||||| |||||||||||| |||||| |||| | ||    
T  28769505 tttataaggactattttggaggattaaaagtatcaattttctgtaaaaagtttttaaaataaagactattcttacaaactacaatattatggaggacaaa 28769604  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||  |||| ||||||||||||  |||| || || ||||||    |||||||||| ||||||||||||||||    
T  28769605 aatcaccattaaaattttata-agact-aatttgaaaactcggaattttatagggactaaaaacatattta 28769673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 203 - 323
Target Start/End: Complemental strand, 20336900 - 20336780
Alignment:
Q  203 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttta 302  Q
    |||| |||||| | |||||  ||||||| | || |||||| |||| |||||| ||||| |||||||||||| |||||||| || ||||||  |||||||     
T  20336900 ttttcaaaatagggactataattacaaaattcaatattatggaggactaaaattaccattaaaattttataaggactaaagttgaaaactcttgattttg 20336801  T
Q  303 taggaactaaaaacatattta 323  Q
    |||| ||||||||||||||||    
T  20336800 tagggactaaaaacatattta 20336780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 13899564 - 13899456
Alignment:
Q  222 ttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatt 321  Q
    ||||| |||||||| |||||| |||| |||||| ||||| |||||||||||||| |||||| || || |||  ||||| | |||||||||||||||||||    
T  13899564 ttttataaactacaatattatggaggactaaaattaccattaaaattttataggaactaaacttcaagact--tgattatgtaggaactaaaaacatatt 13899467  T
Q  322 t-accctttta 331  Q
    | |||||||||    
T  13899466 tgaccctttta 13899456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 323
Target Start/End: Complemental strand, 20315018 - 20314887
Alignment:
Q  192 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 291  Q
    |||||||||| |||| ||||||   |||||| ||||||| | || |||||| |||| |||||| | ||| |||||||||||| |||||||| || |||||    
T  20315018 tttgtaaaaaattttcaaaatagagactattattacaaaattcaatattatggaggactaaaattgccattaaaattttataaggactaaagttgaaaac 20314919  T
Q  292 ttatgattttataggaactaaaaacatattta 323  Q
    |  ||||||| |||| ||||||| ||||||||    
T  20314918 tcttgattttgtagggactaaaagcatattta 20314887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 22853361 - 22853489
Alignment:
Q  144 ctatttatattt-ataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattat 242  Q
    |||||||||||| ||| | | |||||| ||||| ||||||| || ||| || ||| ||| ||||||||||| | |||||||||||||| || | ||||||    
T  22853361 ctatttatattttataggaactattttaaaggattaaaagtatctatttttagtataaattttttaaaataaggactatttttacaaattaaaatattat 22853460  T
Q  243 agagggctaaaaataccactaaaatttta 271  Q
     |||| |||||| ||||| ||||||||||    
T  22853461 ggaggactaaaattaccattaaaatttta 22853489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 17268957 - 17268848
Alignment:
Q  196 taaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttat 295  Q
    ||||| |||| ||||||||  ||||||||||||||||||| || |||||| | |||||| || || ||||||| |||| |||||| | ||||| |||  |    
T  17268957 taaaatgtttataaaatatagactatttttacaaactacaataatatagaagactaaaattatcattaaaattgtatatggactatacttaaacactcgt 17268858  T
Q  296 gattttatag 305  Q
     |||||||||    
T  17268857 aattttatag 17268848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 323
Target Start/End: Original strand, 9766052 - 9766151
Alignment:
Q  224 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||| |||| |||||| |||||| || || ||||||||| |||  | |||| ||||||  || | |||||||||  ||||||||||||||||    
T  9766052 ttacaaactacaatattgtagaggactaaaattatcattaaaattttctagaaaataaacttaaaagtttctaattttatagatactaaaaacatattta 9766151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 16876503 - 16876437
Alignment:
Q  203 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattt 269  Q
    ||||||||||| | |||||| |||||||||||| |||||| |||| |||||| ||| | ||||||||    
T  16876503 tttttaaaatagggactattcttacaaactacaatattatggaggactaaaattacaattaaaattt 16876437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 153 - 320
Target Start/End: Complemental strand, 20986099 - 20985930
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattattt--gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggct 250  Q
    |||||| ||| ||||||| |||||||||||| || ||| |||  |||||||||||| |||||| | |||||| || ||||||||| |||| |||| | ||    
T  20986099 tttatagggactattttggaggactaaaagtatctattttttttgtaaaaagttttcaaaatagggactattcttgcaaactacaatattttagaagact 20986000  T
Q  251 aaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 320  Q
    |||| ||||| ||||||||||||||||||||| |||||||||  ||||||| |||||| |||||||||||    
T  20985999 aaaattaccattaaaattttatagggactaaatttaaaaactcgtgattttgtaggaattaaaaacatat 20985930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 33752959 - 33753128
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| || | ||||||||| |||| ||||||| ||  ||| ||||||   || ||| |||||||||||| |||||| |||||||||    
T  33752959 tttatagggactattttggagaagtaaaagtgttcattttttgtaataaagtttcaaaatagtgaccattcttacaaactacaatattatggagggctaa 33753058  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||  |||| |||||||||||| |||||||| || ||||||| ||||||| |||| ||||||||||||||||    
T  33753059 aatcaccattaaaattttatacggactaaactttaaaacttgtgattttgtagg-actaaaaacatattta 33753128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 50919301 - 50919448
Alignment:
Q  175 actaaaagtgtccattatttg-taaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttata 273  Q
    |||||| ||||||||| |||  |||||||||||||||||||  | |||||||||||| |||||||| || || | |||||| ||||| ||||||||||||    
T  50919301 actaaatgtgtccatttttttctaaaaagtttttaaaatatcgattatttttacaaattacattatcat-gaagactaaaattaccattaaaattttata 50919399  T
Q  274 gggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||| || |||| |||||||||| || | ||||||||||||||||    
T  50919400 gggactaaactt-aaaatttatgattttgtaaggactaaaaacatattta 50919448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 16545413 - 16545578
Alignment:
Q  157 taaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaat 256  Q
    |||||| ||||||| |||||||||| | |||||| |||||| |||||||| |||||| | || ||||||| |||||||| |||| | ||||  ||||  |    
T  16545413 taaggactattttggaggactaaaaatatccattttttgtataaagttttcaaaatagggaccattttta-aaactacaatattttggaggagtaaattt 16545511  T
Q  257 accactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    | || |||||||||||||||| |||| ||||||||| |  ||||| |||| | ||||||||||||||    
T  16545512 atcattaaaattttatagggattaaacttaaaaactcaaaattttgtagggattaaaaacatattta 16545578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 13392935 - 13392831
Alignment:
Q  197 aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatg 296  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | || | |||||| || || ||||| ||||||||||||||| || |||||| |||    
T  13392935 aaaaagtttttaaaatagggactatttttacaaactacaatattttggatgactaaaattaacattaaaactttatagggactaaactttaaaactaatg 13392836  T
Q  297 atttt 301  Q
    |||||    
T  13392835 atttt 13392831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 25506585 - 25506709
Alignment:
Q  197 aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatg 296  Q
    ||||||||||||||||||| ||||||  ||||||||||| ||||||| ||| ||| ||||| || ||||| || ||||| |||||| || |||| |  ||    
T  25506585 aaaaagtttttaaaatatggactattcatacaaactacaatattataaaggactacaaataacattaaaa-ttaataggaactaaactttaaaa-tcgtg 25506682  T
Q  297 attttataggaactaaaaacatattta 323  Q
    ||||| ||||||||||| |||||||||    
T  25506683 attttgtaggaactaaacacatattta 25506709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 224 - 320
Target Start/End: Original strand, 29307657 - 29307753
Alignment:
Q  224 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 320  Q
    |||||||||||| |||| |  ||| |||||| ||| | |||||| |||||||||||||| ||||||||| |||||||| |||| |||| ||||||||    
T  29307657 ttacaaactacagtattttgaaggactaaaattacaattaaaatcttatagggactaaacttaaaaactcatgattttgtagggactagaaacatat 29307753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 37470916 - 37470983
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaac 231  Q
    ||||||| |||||||||||  |||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  37470916 tattttggaggactaaaagcatccattttttgtaaaaagtttttcaaataggaactattcttacaaac 37470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 16545369 - 16545318
Alignment:
Q  276 gactaaaattaaaaacttatgattttataggaactaaaaacatatttaccct 327  Q
    ||||||| |||||||||| | |||||||||| ||||||||||||||||||||    
T  16545369 gactaaacttaaaaacttgtaattttatagggactaaaaacatatttaccct 16545318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 3891541 - 3891451
Alignment:
Q  227 caaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaaca 317  Q
    |||| |||| |||||  |||| |||||| ||||| ||||||||||||||||||||| ||| | | || ||||||| ||||| |||||||||    
T  3891541 caaattacaatattacggaggactaaaactaccaataaaattttatagggactaaacttatacatttgtgattttgtaggatctaaaaaca 3891451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 1236708 - 1236755
Alignment:
Q  276 gactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||||||||||| ||||| |||| | ||||||||||||||    
T  1236708 gactaaaattaaaaacttataattttttagggattaaaaacatattta 1236755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 37471004 - 37471094
Alignment:
Q  226 acaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 316  Q
    |||||||| | |||||| |||| ||||||  |||| |||| |||||||||||||||| || ||||||  ||||||  |||| |||||||||    
T  37471004 acaaactataatattatggaggactaaaagcaccattaaatttttatagggactaaacttgaaaactcttgatttggtagggactaaaaac 37471094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 23278793 - 23278822
Alignment:
Q  294 atgattttataggaactaaaaacatattta 323  Q
    ||||||||||||||||||||||||||||||    
T  23278793 atgattttataggaactaaaaacatattta 23278822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 29102956 - 29102855
Alignment:
Q  203 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttta 302  Q
    ||||||||||| | |||||||||  || ||||| |||| | |||| |||||| || || | ||||| ||||||||||||| || |||||| ||||| |||    
T  29102956 tttttaaaatagggactatttttgaaagctacaatattttggaggactaaaattatcatttaaattgtatagggactaaacttgaaaactcatgatatta 29102857  T
Q  303 ta 304  Q
    ||    
T  29102856 ta 29102855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 34904180 - 34904010
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||| ||||| ||||||  |||||||||||| |||||| ||||||||||||||| |||||| | | |||| |||||||||||| ||||||  ||  ||||    
T  34904180 tttaaaaggactattttataggactaaaagtatccattctttgtaaaaagttttcaaaatagggattattcttacaaactacaatattatgaagaactaa 34904081  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||  | || ||||||| |||||||||| |||||||||| ||||||| |||| ||||||||||||||||    
T  34904080 aattattattacaattttacagggactaaacttaaaaacttgtgattttgtagggactaaaaacatattta 34904010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 6191225 - 6191094
Alignment:
Q  187 cattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaatta 286  Q
    |||| ||||||||||||||| |||||| | |||||| ||||||| |||| |||||| |||| |||||| ||||| ||||||||||||||||||||| ||     
T  6191225 cattttttgtaaaaagttttcaaaatacggactattcttacaaagtacaatattatggaggactaaaattaccattaaaattttatagggactaaacttg 6191126  T
Q  287 aaaacttatgattttataggaactaaaaacat 318  Q
    || ||| ||||||||||||  |||||||||||    
T  6191125 aatactaatgattttatagatactaaaaacat 6191094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 855715 - 855586
Alignment:
Q  172 aggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttta 271  Q
    |||||||||| | | |||| ||||||||||||||| |||||||| ||||||  ||||||||||| ||| |  |||| |||||| ||||| ||||||||||    
T  855715 aggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactacaatatcaccgaggactaaaattaccattaaaatttta 855616  T
Q  272 tagggactaaaattaaaaacttatgatttt 301  Q
    ||||||||||| ||||||||| ||||||||    
T  855615 tagggactaaacttaaaaactcatgatttt 855586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 35954383 - 35954224
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgt-aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 262  Q
    ||||||| |||||||||||| | || | ||| | |||||| ||||| ||||   |||||| |||||||||||| |||||| |||| |||||| ||||| |    
T  35954383 tattttggaggactaaaagttttcaatttttattaaaaagattttataatagagactattcttacaaactacaatattattgaggactaaaattaccatt 35954284  T
Q  263 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||| |||||||||||| || ||||||| ||| |||||||| ||||||||||||||||    
T  35954283 aaaatttaatagggactaaactttaaaacttgtga-tttatagggactaaaaacatattta 35954224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 31994722 - 31994888
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||| || ||||||||||| |||  |||||||||| |||||  | |||||| ||||||| |||| |||||| |||  ||||    
T  31994722 tttatagggactattttggaggattacaagtgtccattttttaaaaaaagttttcaaaattgggactattcttacaaattacaatattatggagaactaa 31994821  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacata 319  Q
    || ||| | |||||||||| ||||| |||| ||||||| || ||||||| |||| ||||||||||||    
T  31994822 aattactattaaaattttaaagggattaaacttaaaaatttgtgattttgtagggactaaaaacata 31994888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 164 - 319
Target Start/End: Complemental strand, 8794731 - 8794580
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 263  Q
    ||||||| | |||||||| |||||||| |||||||||||||||||||||| | |||||| |||| || |||| ||||||   || |||||| ||||| ||    
T  8794731 tattttggatgactaaaaatgtccattttttgtaaaaagtttttaaaatagggactattcttacgaattacaatattat---ggactaaaattaccatta 8794635  T
Q  264 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacata 319  Q
    |||||||||| |||||||| || |||| || ||||||| |||| ||| ||||||||    
T  8794634 aaattttata-ggactaaacttgaaaatttgtgattttgtagggactgaaaacata 8794580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 30641034 - 30641194
Alignment:
Q  164 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 262  Q
    ||||||| ||||| |||||| |||||| ||| ||| |||||||| |||||| | |||| |||||||||||| | ||||   |||| ||||| |||||| |    
T  30641034 tattttggaggaccaaaagtatccatttttttgtataaagttttcaaaatagggactacttttacaaactaaaatatttcggaggactaaatataccatt 30641133  T
Q  263 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||| ||| |||||||  ||||||||| ||||| || |||| ||||||||||||||||    
T  30641134 aaaatttcatatggactaagcttaaaaactcatgatattgtagggactaaaaacatattta 30641194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 27694513 - 27694683
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||||||||| |||||||||||| | || ||| |||||||||||||||||||||| | || | |||||| ||| ||| |||| | ||||  |||    
T  27694513 tttatagggattatttagaaggactaaaattatctattttttgtaaaaagtttttaaaatagggaccacttttacgaaccacaatattttggaggattaa 27694612  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||||  |||||||| | ||| | |||| ||||||||| ||||||||  | ||| ||||||||||||||    
T  27694613 aattacctttaaaatttgacaggaattaaacttaaaaactcatgattttgcaagaattaaaaacatattta 27694683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 39293110 - 39293279
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||| ||||| | |||||| |||  |||| |||||||||||| |||||||| ||||||| |||| |||| |||||| ||||    
T  39293110 tttatatggactattttggaggaataaaaatatccatttttta-aaaatgtttttaaaataggaactattattacaaattacaatattttagaggactaa 39293208  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||||| |||||||||||||||| ||||  || ||| |  ||||||| || | | ||||||||||||||    
T  39293209 aattaccattaaaattttatagggattaaacctagaaattcgtgattttgtatggattaaaaacatattta 39293279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 10077764 - 10077626
Alignment:
Q  164 tattttgaaggactaaaagtgtccattattt--gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccac 261  Q
    ||||||| |||||||||| | |||||| |||  |||||||||||| |||||| | |||||| |||||||||||| ||||||  |||  ||||| |||||     
T  10077764 tattttggaggactaaaaatatccattttttttgtaaaaagttttcaaaatagggactattattacaaactacaatattatgaaggattaaaattaccat 10077665  T
Q  262 taaaattttatagggactaaaattaaaaacttatgatttt 301  Q
    ||||| ||||||||||||||| || |||||| ||||||||    
T  10077664 taaaa-tttatagggactaaacttgaaaactcatgatttt 10077626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 24490617 - 24490721
Alignment:
Q  219 tatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacat 318  Q
    |||| |||||||||||| |||| |||||| |||||| ||| | ||||||||||||| ||||||| ||||||||  || ||||| |||| |||||||||||    
T  24490617 tattcttacaaactacaatattgtagaggactaaaattactattaaaattttatagagactaaacttaaaaacacataattttgtagggactaaaaacat 24490716  T
Q  319 attta 323  Q
    |||||    
T  24490717 attta 24490721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 29242582 - 29242730
Alignment:
Q  173 ggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttat 272  Q
    ||||||||||| || ||| ||||||||||| |   |||||| | |||||| |||||||||| | |||  | |||| |||||| ||||| |||||||||||    
T  29242582 ggactaaaagtatcgattttttgtaaaaaggtc--aaaatagggactattcttacaaactataatatcttcgaggactaaaattaccattaaaattttat 29242679  T
Q  273 agggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||| || ||||||  | ||||| |||| ||||||||| ||||||    
T  29242680 agggactaaacttgaaaactcctaattttgtagggactaaaaacgtattta 29242730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 30632591 - 30632676
Alignment:
Q  208 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaactt 293  Q
    |||||| | ||||||| ||||||||||| ||||||  | | |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  30632591 aaaatagggactatttgtacaaactacaatattatccaagactaaaattaccattaaaattttatagagactaaaattaaaaactt 30632676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 30669060 - 30669145
Alignment:
Q  208 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaactt 293  Q
    |||||| | ||||||| ||||||||| | ||||||  | | |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  30669060 aaaatagggactatttgtacaaactataatattattcaagactaaaattaccattaaaattttatagagactaaaattaaaaactt 30669145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 36774085 - 36773985
Alignment:
Q  221 tttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 320  Q
    |||||||||| |||| ||| | |||||  ||||| ||||| |||||| ||||||| ||||| || |||||||| ||| ||| ||||||||||||||||||    
T  36774085 tttttacaaattacaatatcacagaggattaaaattaccattaaaatcttataggaactaacat-aaaaacttgtgagtttgtaggaactaaaaacatat 36773987  T
Q  321 tt 322  Q
    ||    
T  36773986 tt 36773985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 37284290 - 37284351
Alignment:
Q  262 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||||||||||||| ||||||||| || ||||| || | |||||||| |||||||    
T  37284290 taaaattttatagggactaaacttaaaaactcataattttgtaaggactaaaaatatattta 37284351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 434530 - 434690
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattatt-atagagggctaaaaataccact 262  Q
    ||||||| ||||| |||| | |||||| |||  |||||||||| |||| ||| |||||| |||||||||  | |||| | | ||| ||||||  |||| |    
T  434530 tattttggaggacgaaaaatatccattttttagaaaaagttttgaaaagatggactattcttacaaacttaaatatttacaaaggactaaaatcaccatt 434629  T
Q  263 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||  ||||||| |||||||  | || ||| ||| || |||||||||||||||    
T  434630 aaaattttatattgactaaacttaaaaatgtgtgctttgataagatctaaaaacatattta 434690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 21595085 - 21595025
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 213  Q
    |||||||||||||||||| ||||| |||| | || ||| ||||||||||||||| ||||||    
T  21595085 tttataaggattattttggaggaccaaaaatatctattttttgtaaaaagttttcaaaata 21595025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 11711255 - 11711316
Alignment:
Q  262 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||||||||||||| || ||| ||  ||||||||||  ||||||||| |||||||    
T  11711255 taaaattttatagggactaaacttgaaagctcgtgattttataaaaactaaaaatatattta 11711316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 17448896 - 17448957
Alignment:
Q  262 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||||   |||||| ||||||||| || |||||||||| | ||||||||||||||    
T  17448896 taaaattttataaaaactaaacttaaaaactcataattttatagggattaaaaacatattta 17448957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 33912766 - 33912690
Alignment:
Q  145 tatttatatttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatt 222  Q
    |||||||||||| || || |||||||||||| ||| ||| | || ||||| ||||||||| |||||||| ||||||||    
T  33912766 tatttatatttacaaagactattttgaaggaataatagtattca-tatttttaaaaagttgttaaaataagaactatt 33912690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 43910224 - 43910163
Alignment:
Q  262 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||||| | |||| |||||||||||||||||| |||| |||  ||| |||||||    
T  43910224 taaaattttataggaattaaacttaaaaacttatgattttgtagggactccaaatatattta 43910163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 25067810 - 25067651
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 263  Q
    ||||||| | |||||||||| |||||| |||||||| |||||| |||||| | ||||||||||||||||| | |||||| ||||  ||||| ||||| ||    
T  25067810 tattttggaagactaaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatattatggaggattaaaattaccatta 25067711  T
Q  264 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||||||  || ||| ||||||| |||||||||| |||  | ||||||||||||||    
T  25067710 aaattttatagaaaccaaacttaaaaatttatgattttgtagagattaaaaacatattta 25067651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 27567663 - 27567835
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgt--aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggct 250  Q
    |||||||||| ||||||| |||||||||| | | | || ||| |  |||||||||| |||||| | |||||| |||||||||||| ||||||  ||| ||    
T  27567663 tttataaggactattttggaggactaaaaatatactttttttttgcaaaaagttttcaaaataaggactattcttacaaactacaatattatgtaggact 27567762  T
Q  251 aaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||| ||||| |||||||||||||||| |||| || |||||| |||||||| |||| |||||||| |||||||    
T  27567763 aaaattaccattaaaattttatagggaataaactttaaaactcatgattttgtagggactaaaaatatattta 27567835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 164 - 323
Target Start/End: Complemental strand, 11297917 - 11297757
Alignment:
Q  164 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 262  Q
    ||||||| |||||||||||| |||||| ||| ||| |||||||| |||||| | ||||||||||||||||| | |||| | |||| |||||| ||||| |    
T  11297917 tattttggaggactaaaagtatccattttttagtataaagttttcaaaatagggactatttttacaaactaaaatattttggaggactaaaattaccatt 11297818  T
Q  263 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||| ||||| |||||  ||||||||| || ||||| |||| | ||||||||||||||    
T  11297817 aaaatttcataggaactaagcttaaaaactcattattttgtagggaataaaaacatattta 11297757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 34471327 - 34471227
Alignment:
Q  218 ctatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaaca 317  Q
    ||||| |||||||||||| |||| | |||| |||||| ||||| ||||||||||||||||||||| |||||| ||| ||||||| |||| ||||||||||    
T  34471327 ctattattacaaactacaatattttggaggactaaaattaccattaaaattttatagggactaaacttaaaagcttgtgattttgtagggactaaaaaca 34471228  T
Q  318 t 318  Q
    |    
T  34471227 t 34471227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 20132223 - 20132053
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| ||||||||| || |||||| ||||||||||||||| |||| |   |||||| ||||||| || | |||| |  ||| ||||    
T  20132223 tttatagggactattttggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaattataatattttttaggactaa 20132124  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    || ||| | ||||||||||| |  |||||| ||||||||| || ||| |||||| ||||||||||||||||    
T  20132123 aattacaattaaaattttattgaaactaaacttaaaaactcataattatatagggactaaaaacatattta 20132053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 153 - 301
Target Start/End: Complemental strand, 28098700 - 28098553
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaa-gtttttaaaatatgaactatttttacaaactacattattatagagggcta 251  Q
    |||||| ||| ||||||| |||||||||| | | |||| |||||||||| ||||| |||||||| | ||||| ||||||||||  |||||| |||| |||    
T  28098700 tttatagggactattttggaggactaaaaatattcattttttgtaaaaaagttttcaaaatatggattatttctacaaactac--tattatcgaggacta 28098603  T
Q  252 aaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 301  Q
    ||| ||||| ||||||||||||  ||| ||| ||||||||| ||||||||    
T  28098602 aaattaccattaaaattttataaagaccaaacttaaaaactcatgatttt 28098553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 13009377 - 13009480
Alignment:
Q  167 tttgaaggactaaaagtgtcca-ttatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaa 265  Q
    |||| |||||||||||| | || || ||||||||||||| ||||||||   |||||| |||||||||||| ||||||||||| |||||| ||||| ||||    
T  13009377 tttggaggactaaaagtattcacttttttgtaaaaagttattaaaataacgactattcttacaaactacaatattatagaggactaaaattaccattaaa 13009476  T
Q  266 attt 269  Q
    ||||    
T  13009477 attt 13009480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 30851674 - 30851797
Alignment:
Q  192 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 291  Q
    ||||| |||| ||||||||||| | |||||| ||||||||| || |||||| ||   |||||| ||||| ||||||||||||||  ||||| || |||||    
T  30851674 tttgtcaaaattttttaaaatagggactattcttacaaacttcaatattatggaaaactaaaattaccattaaaattttataggatctaaagttgaaaac 30851773  T
Q  292 ttatgattttataggaactaaaaa 315  Q
    |  | |||||||||||||||||||    
T  30851774 tcttaattttataggaactaaaaa 30851797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 289
Target Start/End: Complemental strand, 12925382 - 12925246
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||||||||||||||| |||||||||| | || ||| ||||||||||||||| |||||| | | |||| ||| ||| || | | || | |||  ||||    
T  12925382 tttataaggattattttggaggactaaaaatatctattttttgtaaaaagttttaaaaataaggattattattaaaaattataattttttggagaactaa 12925283  T
Q  253 aaataccactaaaattttatagggactaaaattaaaa 289  Q
    || || || |||||||||||||| |||||| ||||||    
T  12925282 aattatcattaaaattttataggaactaaacttaaaa 12925246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 323
Target Start/End: Complemental strand, 21367255 - 21367169
Alignment:
Q  237 tattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||| ||||  ||||| ||||| ||||||||||||  ||||||| ||||||||| || ||||||||||  |||||||||||||||    
T  21367255 tattatggaggattaaaattaccattaaaattttataaagactaaatttaaaaactcataattttataggggctaaaaacatattta 21367169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 28565079 - 28565170
Alignment:
Q  192 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaa 283  Q
    |||||||| |||||| ||||||   |||||||||| |||||||||||||||| ||| |||||| ||  | |||||||||||| | |||||||    
T  28565079 tttgtaaagagttttcaaaatagagactatttttataaactacattattataaaggactaaaattattattaaaattttataagaactaaaa 28565170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 28555354 - 28555280
Alignment:
Q  249 ctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||| ||||| |||||||||||| |||||||| ||||||| | | |||||| |||  ||||||||||||||||    
T  28555354 ctaaaattaccattaaaattttatatggactaaacttaaaaaatcacgattttgtagagactaaaaacatattta 28555280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 28545217 - 28545287
Alignment:
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||||||| ||| |||||||||  |||| | || |||| |||||||||| |||| ||||||||||||||||    
T  28545217 aaataccattaatattttatagaaactacactttaaaatttatgattttgtagggactaaaaacatattta 28545287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 192 - 323
Target Start/End: Original strand, 5503 - 5634
Alignment:
Q  192 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 291  Q
    |||||| |||||||| |||||| | |||| |||||||||||| | |||| | |||| ||||| |||||| |||||||| |||||||| ||  ||||||||    
T  5503 tttgtataaagttttcaaaatagggactacttttacaaactaaaatattttggaggactaaatataccattaaaatttcatagggaccaagcttaaaaac 5602  T
Q  292 ttatgattttataggaactaaaaacatattta 323  Q
    | |||||||| |||| ||||||||||||||||    
T  5603 tcatgattttgtagggactaaaaacatattta 5634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 164 - 323
Target Start/End: Original strand, 152180 - 152339
Alignment:
Q  164 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 263  Q
    ||||||||| |||||||| | | |||| |||| || ||||||| |||||| | |||||| |||||| ||||| ||||||  ||| |||||| ||||| ||    
T  152180 tattttgaaagactaaaaatattcattttttgcaagaagttttaaaaatagggactattcttacaatctacaatattatgaaggactaaaattaccatta 152279  T
Q  264 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    ||||||||||  ||||||| || |||| | || |||||||||| |||| |||||||||||    
T  152280 aaattttataaagactaaacttgaaaattcataattttatagggactacaaacatattta 152339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 153 - 330
Target Start/End: Original strand, 16922 - 17099
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||  ||||||||| || | |||| || |||||| ||||| |||||| | |||||| ||||||| | |  |||| |  ||| ||||    
T  16922 tttatagggactattttagaggactaaaggtatacatttttagtaaaacgttttcaaaatagggactattcttacaaattgctatattttgtaggactaa 17021  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctttt 330  Q
    || ||||| |||||||||||||||| ||||  | ||||||  |||||||||||| |||||||||||||||| ||||||    
T  17022 aattaccattaaaattttatagggattaaacctgaaaactcgtgattttatagggactaaaaacatatttaacctttt 17099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 153 - 318
Target Start/End: Original strand, 253745 - 253909
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 252  Q
    |||||| ||| ||||||| |||| ||||||| |||||| ||||||||||  ||| ||||||   |||||  |||||||||| | |||| || ||| ||||    
T  253745 tttatagggactattttggaggattaaaagtatccattttttgtaaaaaagttt-aaaatagagactatccttacaaactataatattttaaaggactaa 253843  T
Q  253 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacat 318  Q
    || ||| | |||||||||||| | |||||| ||||||||| || |||||||||||| |||||||||    
T  253844 aattactattaaaattttatatgaactaaacttaaaaactcataattttataggaattaaaaacat 253909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 33216 - 33276
Alignment:
Q  153 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 213  Q
    |||||||||||||||||| ||||| |||| | || ||| ||||||||||||||| ||||||    
T  33216 tttataaggattattttggaggaccaaaaatatctattttttgtaaaaagttttcaaaata 33276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 8714 - 8599
Alignment:
Q  208 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttatagga 307  Q
    |||||| | |||||||| |||||||  | |||| | |||| |||||| ||||| |||||||| || ||||||||  ||||||||| |||||||| ||||     
T  8714 aaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcattgggactaagcttaaaaactcatgattttttaggg 8615  T
Q  308 actaaaaacatattta 323  Q
    ||||||||||||||||    
T  8614 actaaaaacatattta 8599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 3300 - 3221
Alignment:
Q  244 gagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 323  Q
    |||| |||||| ||||| |||||||| ||||||| |||  ||||||||| |||||||| |||| ||||||||||||||||    
T  3300 gaggactaaaattaccattaaaatttcatagggattaagcttaaaaactcatgattttgtagggactaaaaacatattta 3221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 95 - 2
Alignment:
Q  208 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 301  Q
    |||||| | |||||||| |||||||  | |||| | |||| |||||| ||||| |||||||| |||||||||||  ||||||||| ||||||||    
T  95 aaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgatttt 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 19788 - 19873
Alignment:
Q  216 aactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 301  Q
    |||||||||||| ||||||| |||| | || | |||||| ||||  |||||||||||||||||||||  |||||| | ||||||||    
T  19788 aactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgatttt 19873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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