View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_44 (Length: 367)
Name: NF1763_low_44
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 5663444 - 5663724
Alignment:
| Q |
17 |
ataattttttggaatgctattctgtttccattgtcatgtttgcttctttaactatgttaagttgatttgttgcagctgaagtggattggtctgctattac |
116 |
Q |
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| T |
5663444 |
ataattttttggaatgctattctgtttccattgtcatgtttgcttctttaactatgtcaagttgatttgttgcagctgaagtggattggtctgctattac |
5663543 |
T |
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| Q |
117 |
tacgggtggcgatgaaaggacgttggagtttgctagacttaaaatttttacgtttggcattgagtagaatcaaaaacaggtttattctattgtccttgat |
216 |
Q |
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| T |
5663544 |
tacgggtggcgatgaaaggacgttggagtttgctagacttaaaatttttacgtttggcattgagtagaatcaaaaacaggtttattctattgtccttgat |
5663643 |
T |
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| Q |
217 |
ttatttctaatggtttttatgctactgttgttgtcattttttatcaatgcagtcaattttcaatagagctgcttctgtata |
297 |
Q |
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| T |
5663644 |
ttatttctaatggtttttatgctactgttgttgtcattttttatcaatgcagtcaattttcaatagagctgcttctgtata |
5663724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 35607918 - 35608080
Alignment:
| Q |
78 |
ttgatttgttgcagctgaagtggattggtctgctattactacgggtggcgatgaaaggacgttggagtttgctagacttaaaatttttacgtttggcatt |
177 |
Q |
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| T |
35607918 |
ttgattttttgcagctgaagtagattggcctgctattgtt---ggtgaccatgaaaggcagttggagcttgctagactgaaattttgtactttttgcatt |
35608014 |
T |
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| Q |
178 |
gagtagaatcaaaaacaggtttattctattgtccttga-tttatttctaatggtttttatgctact |
242 |
Q |
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| T |
35608015 |
gagtacaatccaaaacaggtttaacctatggtccttgattttttttatgatagtttttatgctact |
35608080 |
T |
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