View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_45 (Length: 361)

Name: NF1763_low_45
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_45
NF1763_low_45
[»] chr6 (9 HSPs)
chr6 (17-282)||(34923542-34923807)
chr6 (94-166)||(34129860-34129932)
chr6 (94-166)||(34135549-34135621)
chr6 (94-166)||(34138452-34138524)
chr6 (24-95)||(34129766-34129837)
chr6 (24-95)||(34138358-34138429)
chr6 (24-95)||(34135455-34135526)
chr6 (291-352)||(34923911-34923972)
chr6 (48-96)||(24339115-24339163)
[»] chr4 (3 HSPs)
chr4 (167-286)||(18178378-18178497)
chr4 (291-352)||(18178592-18178653)
chr4 (223-257)||(32433224-32433258)
[»] chr3 (4 HSPs)
chr3 (167-286)||(13215597-13215716)
chr3 (167-286)||(46699520-46699639)
chr3 (291-352)||(13215441-13215502)
chr3 (291-352)||(46699723-46699784)
[»] chr8 (1 HSPs)
chr8 (188-241)||(38383326-38383379)
[»] chr5 (2 HSPs)
chr5 (54-95)||(31269604-31269645)
chr5 (48-96)||(30104390-30104438)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 34923542 - 34923807
Alignment:
Q  17 acctccaccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggcaaacaaccaagctaaattctta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34923542 acctccaccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggcaaacaaccaagctaaattctta 34923641  T
Q  117 aacatagtgttattatacacaacacagtcaacatgacttatttattatgtgcattattaaggaacataacgaaatatcagatgaaatagaactattttag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34923642 aacatagtgttattatacacaacacagtcaacatgacttatttattatgtgcattattaaggaacataacgaaatatcagatgaaatagaactattttag 34923741  T
Q  217 aagggatataagaaaatcttttgattgtttgttgctttatatttagaaaatgaatgatccgtattc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34923742 aagggatataagaaaatcttttgattgtttgttgctttatatttagaaaatgaatgatccgtattc 34923807  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 34129860 - 34129932
Alignment:
Q  94 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34129860 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 34129932  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 34135549 - 34135621
Alignment:
Q  94 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34135549 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 34135621  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 34138452 - 34138524
Alignment:
Q  94 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34138452 caaacaaccaagctaaattcttaaacatagtgttattatacacaacacagtcaacatgacttatttattatgt 34138524  T

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Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 34129766 - 34129837
Alignment:
Q  24 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34129766 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 34129837  T

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Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 34138358 - 34138429
Alignment:
Q  24 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34138358 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 34138429  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 34135455 - 34135526
Alignment:
Q  24 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcagaaggcattaaggca 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34135455 ccatccataaatgaggacttattaagatagatgctaagggtacatattgaactttcaaaaggcattaaggca 34135526  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 34923911 - 34923972
Alignment:
Q  291 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  34923911 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataat 34923972  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 24339115 - 24339163
Alignment:
Q  48 agatagatgctaagggtacatattgaactttcagaaggcattaaggcaa 96  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  24339115 agatagatgttaagggtgcatattaaactttcagaaggcattaaggcaa 24339163  T

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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 18178378 - 18178497
Alignment:
Q  167 gcattattaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 266  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18178378 gcattactaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 18178477  T
Q  267 tgaatgatccgtattctctt 286  Q
    ||||||||||||||||||||    
T  18178478 tgaatgatccgtattctctt 18178497  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 18178592 - 18178653
Alignment:
Q  291 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  18178592 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataat 18178653  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 32433224 - 32433258
Alignment:
Q  223 tataagaaaatcttttgattgtttgttgctttata 257  Q
    ||||||||||||||||||| |||||||||||||||    
T  32433224 tataagaaaatcttttgatggtttgttgctttata 32433258  T

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Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 13215716 - 13215597
Alignment:
Q  167 gcattattaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 266  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13215716 gcattactaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 13215617  T
Q  267 tgaatgatccgtattctctt 286  Q
    ||||||||||||||||||||    
T  13215616 tgaatgatccgtattctctt 13215597  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 46699520 - 46699639
Alignment:
Q  167 gcattattaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 266  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699520 gcattactaaggaacataacgaaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgattgtttgttgctttatatttagaaaa 46699619  T
Q  267 tgaatgatccgtattctctt 286  Q
    ||||||||||||||||||||    
T  46699620 tgaatgatccgtattctctt 46699639  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 13215502 - 13215441
Alignment:
Q  291 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13215502 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataat 13215441  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 46699723 - 46699784
Alignment:
Q  291 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattttgtgcttcagtataat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  46699723 aacagagtgttcttattcaaaacgccctgtgatcttcaaccaattctgtgcttcaatataat 46699784  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 38383379 - 38383326
Alignment:
Q  188 aaatatcagatgaaatagaactattttagaagggatataagaaaatcttttgat 241  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  38383379 aaatatcagatgaaatagagctattttagaagggatataatgaaatcttttgat 38383326  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 31269645 - 31269604
Alignment:
Q  54 atgctaagggtacatattgaactttcagaaggcattaaggca 95  Q
    ||||||||| ||||||||||||||||||||  ||||||||||    
T  31269645 atgctaaggatacatattgaactttcagaacacattaaggca 31269604  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 30104390 - 30104438
Alignment:
Q  48 agatagatgctaagggtacatattgaactttcagaaggcattaaggcaa 96  Q
    |||||||||||||||||||||  | |||||||| |||||||||| ||||    
T  30104390 agatagatgctaagggtacattataaactttcaaaaggcattaatgcaa 30104438  T

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