View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_56 (Length: 337)

Name: NF1763_low_56
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_56
NF1763_low_56
[»] chr3 (13 HSPs)
chr3 (15-320)||(3753719-3754024)
chr3 (77-320)||(4142749-4142992)
chr3 (77-320)||(4158559-4158802)
chr3 (80-198)||(3745168-3745286)
chr3 (72-177)||(967861-967966)
chr3 (72-192)||(2679178-2679298)
chr3 (80-202)||(2651142-2651264)
chr3 (74-192)||(2687085-2687203)
chr3 (96-184)||(803972-804060)
chr3 (103-177)||(1003714-1003788)
chr3 (103-177)||(1021711-1021785)
chr3 (71-177)||(1937720-1937826)
chr3 (135-211)||(1891770-1891846)
[»] chr5 (1 HSPs)
chr5 (80-248)||(11081379-11081547)
[»] chr8 (1 HSPs)
chr8 (71-204)||(19727108-19727241)
[»] chr1 (1 HSPs)
chr1 (104-180)||(25611754-25611830)
[»] chr4 (1 HSPs)
chr4 (69-170)||(20020552-20020653)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 3753719 - 3754024
Alignment:
Q  15 atcacaatcagctctcggttgtaccaccttcacccaatcaccgccgttataaccattcacttccaactcttccttacgacgtcattccagaaatcctatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753719 atcacaatcagctctcggttgtaccaccttcacccaatcaccgccgttataaccattcacttccaactcttccttacgacgtcattccagaaatcctatg 3753818  T
Q  115 taggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactccgtgtg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3753819 taggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactcagtgtg 3753918  T
Q  215 tccatcgctcggaacctccacttcctaaactacagccgttggtcacacaagtatattctcacatcttatccaatcgactctattttcagagacataacct 314  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3753919 tccatcgcttggaacctccacttcctaaactacagccgttggtcacacaagtatattctcacatcttatccaatcgactctattttcacagacataacct 3754018  T
Q  315 ctaact 320  Q
    ||||||    
T  3754019 ctaact 3754024  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 77 - 320
Target Start/End: Complemental strand, 4142992 - 4142749
Alignment:
Q  77 ccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 176  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4142992 ccaactcttccttccgacgtcattccagaaatcatatgtaggctaccagtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaa 4142893  T
Q  177 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactacagccgttg-gtcacacaagtatattctca 275  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||| ||||||| |||  ||  |||   ||||| |||||||    
T  4142892 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttccgaaactac-gcctatgactcaagaaagtacattctca 4142794  T
Q  276 catcttatccaatcgactctattttcagagacataacctctaact 320  Q
    ||||||||||| | ||||||  ||||| |||||||||||||||||    
T  4142793 catcttatccactggactctgatttcacagacataacctctaact 4142749  T

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Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 77 - 320
Target Start/End: Complemental strand, 4158802 - 4158559
Alignment:
Q  77 ccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 176  Q
    ||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  4158802 ccaactcttccttccgacgtcattctagaaatcatatgtaggctaccggtaaagttcatcctccgattccaatgtgtttgcaagtcatggaattctctaa 4158703  T
Q  177 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactacagccgttg-gtcacacaagtatattctca 275  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||  |||  ||  |||   ||||| |||||||    
T  4158702 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttcctaaacta-tgcctatgactcaagaaagtacattctca 4158604  T
Q  276 catcttatccaatcgactctattttcagagacataacctctaact 320  Q
    ||||||| ||| ||||||||  ||||| |||||||| ||||||||    
T  4158603 catcttacccactcgactctgatttcacagacataaactctaact 4158559  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 3745168 - 3745286
Alignment:
Q  80 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 179  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  3745168 actcttccttccgacgtcattccagaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaatat 3745267  T
Q  180 ccgatccaaaattcgtcaa 198  Q
    | ||||| ||||| |||||    
T  3745268 ctgatcccaaatttgtcaa 3745286  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 967861 - 967966
Alignment:
Q  72 cacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 171  Q
    ||||||| |||||||||| |||  ||||||||||||| ||||||||| || |||||||| || || | | |||||||||||| |||||||| |||||||     
T  967861 cacttccgactcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattc 967960  T
Q  172 tctaat 177  Q
    ||||||    
T  967961 tctaat 967966  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 2679298 - 2679178
Alignment:
Q  72 cacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 171  Q
    ||||||| |||||||||| |||| |||| ||||| || || | |||||||| ||| || ||| |||||| | |||||||||| |||||||||||||| |     
T  2679298 cacttcccactcttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatc 2679199  T
Q  172 tctaatatccgatccaaaatt 192  Q
    ||| || ||||||||||||||    
T  2679198 tctgatctccgatccaaaatt 2679178  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 2651264 - 2651142
Alignment:
Q  80 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 179  Q
    |||||||||| |||| | |||| |||||| ||| ||||||||||||||||| || || ||| | | |||||||| |||||| ||||||||| ||| || |    
T  2651264 actcttcctttcgaccttattcaagaaattctacgtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctcttatct 2651165  T
Q  180 ccgatccaaaattcgtcaagaaa 202  Q
    ||||||  |||||| ||| ||||    
T  2651164 ccgatcacaaattcatcatgaaa 2651142  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 2687203 - 2687085
Alignment:
Q  74 cttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttc 173  Q
    ||||| || ||||||| |||| |||| ||||| || || | |||||| | ||| || ||| |||||| | |||||||||| |||||||||||||| | ||    
T  2687203 cttcccacccttcctttcgacctcatcccagatatactgtctaggttgcaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc 2687104  T
Q  174 taatatccgatccaaaatt 192  Q
    | || ||||||||||||||    
T  2687103 tgatctccgatccaaaatt 2687085  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 804060 - 803972
Alignment:
Q  96 tcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgat 184  Q
    ||||| |||||||  | ||| ||||||| || |||||| | |||| | ||||||| ||||||||||||||||||| |||||||| ||||    
T  804060 tcattgcagaaattttgtgttggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaatatgcgat 803972  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 1003714 - 1003788
Alignment:
Q  103 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 177  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1003714 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1003788  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 1021711 - 1021785
Alignment:
Q  103 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 177  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1021711 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1021785  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 1937826 - 1937720
Alignment:
Q  71 tcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaatt 170  Q
    |||||||| ||||||||||  ||  |||||||||||||||| | |||| || |||| ||  || ||||  ||||||| || ||||||||||||| |||||    
T  1937826 tcacttcccactcttccttttgatctcattccagaaatcctctctaggctatcggtgaaactcctcctgagattccggtgcgtttgcaagtcatagaatt 1937727  T
Q  171 ttctaat 177  Q
     ||||||    
T  1937726 ctctaat 1937720  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 1891846 - 1891770
Alignment:
Q  135 tccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactccgt 211  Q
    |||||| | |||||| ||| |||||||||||||||| |||||| |||||| | || |||| || |||||| ||||||    
T  1891846 tccttcaactccgatctgtctgcaagtcatggaattctctaatctccgattccaagttcgccatgaaacacctccgt 1891770  T

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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 11081379 - 11081547
Alignment:
Q  80 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 179  Q
    |||||||||| |||  |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||| | ||||||    
T  11081379 actcttccttccgatctcattctagaaatcctatgtaggttaccggttaagttcatccttcgattccaatgtgtttgcaagtcgtgaaattctttaatat 11081478  T
Q  180 ccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactaca 248  Q
    | ||||| ||||||||||||||||||||||||||||||  | |||| ||||||||||||||||||||||    
T  11081479 ctgatcccaaattcgtcaagaaacaactccgtgtgtccgccactcgaaacctccacttcctaaactaca 11081547  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 19727108 - 19727241
Alignment:
Q  71 tcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaatt 170  Q
    |||||||| |||||||||| |||  ||||||||||||| ||| ||||| |||| || || ||| || | |  |||||||||||||||||||| | |||||    
T  19727108 tcacttcctactcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgttgaatt 19727207  T
Q  171 ttctaatatccgatccaaaattcgtcaagaaaca 204  Q
     |||||| || ||||  ||||||| ||| |||||    
T  19727208 ctctaatctctgatcacaaattcgccaacaaaca 19727241  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 25611830 - 25611754
Alignment:
Q  104 gaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatc 180  Q
    |||||||| |||||| | ||||| |||||| |||||| |||| | || || |||||||||||||||| |||||||||    
T  25611830 gaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctctaatatc 25611754  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 20020653 - 20020552
Alignment:
Q  69 attcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaa 168  Q
    |||||||||| | |||||||| |||| |||||  |||||| || ||||||||||| || ||| || |||||| | | |||||||| || || ||||||||    
T  20020653 attcacttcccattcttcctttcgacctcattgaagaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaa 20020554  T
Q  169 tt 170  Q
    ||    
T  20020553 tt 20020552  T

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