View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_60 (Length: 326)
Name: NF1763_low_60
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 28429059 - 28429351
Alignment:
| Q |
20 |
cttttatattataaactgtaacggcgaaacttacacacactacgaaagtaaataaaagtggagaattgtaaattcaaatttcaacttcagcatatttgaa |
119 |
Q |
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| T |
28429059 |
cttttatattataaactgtaacggcgaaacttacacacactacggaagtaaa----agtggagaattgtaaattcaaatttcaacttcagcatatttgaa |
28429154 |
T |
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| Q |
120 |
gatattttggaaaaatggatannnnnnn-cttacaaatgagtctattaatatttggaggcattgtacatgataacttgttaggagtgatgatatgaaata |
218 |
Q |
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| T |
28429155 |
gatattt-ggaaaaagggatattttttttcttacaaatgagtctattaatatttggaggtattgtacatgataacttgttaggagtgatgatatgtaata |
28429253 |
T |
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| Q |
219 |
tagatattaatttaattggcattatatttgttaaattgaatcatgtacgtgcagggaaactggagagaaagatgtaagattcaaagtgctattctgtg |
316 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28429254 |
tagatattaatttaattggcattatatttattaaattgaatcatgtacgtgcagggaaactggagagaaagatgtaagattcaaagtgctattttgtg |
28429351 |
T |
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