View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_67 (Length: 305)
Name: NF1763_low_67
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 41745529 - 41745805
Alignment:
| Q |
16 |
atagaatataccttaaggttgtcgatgagtaacatcaaactcctcaattttctgtgaggccacctggtgatgttgagctccctgcatcttttcttcaaaa |
115 |
Q |
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| T |
41745529 |
atagaatataccttaaggttgtcgatgagtaacatcaaactcctcaattttctgtgaggccacctagtgatgttgagctccctgcatcttttcttcaaaa |
41745628 |
T |
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| Q |
116 |
aggtcacaccaacattcagtttcttagcagccattgttataggaacatcaaaatgtttctttatatcatcaaattgcaatgaagatgacctgttcctaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41745629 |
aggtcacaccaacattcagtttcttagcagccattgttataggaacatcaaaatgtttctttatatcatcaaattgcaatgaagatgacctcttcctaat |
41745728 |
T |
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| Q |
216 |
gatgctagtactgctactttgcaatgccaatggaactaat---gacagttcctgattctcccattcattctctttct |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
41745729 |
gatgctagtactgctactttgcaatgccaatggaactaatgacgacaattcctgattctcccattcattctctttct |
41745805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 29589927 - 29589664
Alignment:
| Q |
26 |
ccttaaggttgtcgatgagtaacatcaaactcctcaattttctgtgaggccacctggtgatgttgagctccctgcatcttttcttcaaaaaggtcacacc |
125 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
29589927 |
ccttaaggttctcgatgagtaacatcaaactcctcaattttctgtgagaccacctagtgatgttgagctccctgcatctttttttcaaaagggtcacacc |
29589828 |
T |
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| Q |
126 |
aacattcagtttcttagcagccattgttataggaacatcaaaatgtttctttatatcatcaaattgcaatgaagatgacctgttcctaatgatgctagta |
225 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||| ||| |
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| T |
29589827 |
aacattcattttctcagcagccattgttataggaacatcaaaatgtttctttatgtcatcatactgcaatgaagatgacctcttcctaatgatgccagtg |
29589728 |
T |
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| Q |
226 |
ctgctactttgcaatgccaatggaactaatgacagttcctgattctcccattcattctctttct |
289 |
Q |
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||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29589727 |
ctgctgcttggcaatgccaatggaactaatgacaattcctgattctcccattcattctctttct |
29589664 |
T |
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