View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_70 (Length: 296)
Name: NF1763_low_70
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 46248852 - 46249131
Alignment:
| Q |
1 |
atcacattcctctcatgaaagactaattaattaatgatgcacttccaactataatacatcaggacaaaatggactgaaattacacataactttagcaatt |
100 |
Q |
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| T |
46248852 |
atcacattcctctcatgaaagactaattaattaatgatgcacttccaactataatacatcaggacaaaatggactgaaattacacacaactttagcaatt |
46248951 |
T |
|
| Q |
101 |
ttataataaataactacaaaacattgatacaaacactcgacatgacacttatactgacagattgtcatcgaacacgccttcaatataaaatgtcaatgaa |
200 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46248952 |
ttatgataaataaccacaaaacattgatacaaacactcgacatgacacttatactgacagattgtcatcggacacgccttcaatataaaatgtcaatgaa |
46249051 |
T |
|
| Q |
201 |
tgctatagataaagaaagggaaaagaaataaagagaatgacacctgacctgaccagtgcgagctctaccaaccaaatcac |
280 |
Q |
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| T |
46249052 |
tgctatagataaagaaagggaaaagaaataaagagaatgacacctgacctgaccagtgcgagctctaccaaccaaatcac |
46249131 |
T |
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