View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_low_71 (Length: 294)
Name: NF1763_low_71
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30903695 - 30903933
Alignment:
| Q |
1 |
tctatatccttctaagccttc-ttttatacatggtttgtgggttttggtgttctaggaagctcgacatcaagtggtttgactacttcttttgctaacaag |
99 |
Q |
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| T |
30903695 |
tctatatccttctaagccttccttttttaaatggtttgtgggttttggtgttgtaggaagctcggcatcaagtgcttcgactacttcttttgctaacaag |
30903794 |
T |
|
| Q |
100 |
gcttcaactccggctgtttccgcatctactgctcttacatttggtaagcctttgtttatccctctatgatttctagggatatgtaaaccatggaaaatag |
199 |
Q |
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| T |
30903795 |
gcttcaactccggctatttccgcatctactgctcttacattcggtaagcctttgtttatccctctatgattt-tagggatatgtaaaccatggaaaatag |
30903893 |
T |
|
| Q |
200 |
tctcctactactattatggcaatattaaattatcatcatt |
239 |
Q |
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| T |
30903894 |
tctcctactactattatggcaatattaaattatcatcatt |
30903933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 30896913 - 30896948
Alignment:
| Q |
205 |
tactactattatggcaatattaaattatcatcattt |
240 |
Q |
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| T |
30896913 |
tactactattatgggaatattaaattatcatcattt |
30896948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 25152791 - 25152983
Alignment:
| Q |
4 |
atatccttctaagccttcttttatacatggtttgtgggttttggtgttctaggaagctcgacatcaagtggtttgactacttcttttgctaacaaggctt |
103 |
Q |
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| T |
25152791 |
atatccttctaagccttcttttttacatggtttgtgggttttggtgttgtaggaagctcgagatcaagtgattcgactacttcttttgctaacaaggctt |
25152890 |
T |
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| Q |
104 |
caactccggctgtttccgcatctactgctcttacatttggtaagcctttgtt-tatccctctatgatttctagggatatgtaaaccatggaaa |
195 |
Q |
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| T |
25152891 |
caactccggctatttccgcatctactgctcttacattcagtaagcctttgttatatccctctatgatttctagggatatgtaaaccaaggaaa |
25152983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 15910959 - 15910898
Alignment:
| Q |
88 |
tttgctaacaaggcttcaactccggctgtttccgcatctactgctcttacatttggtaagcc |
149 |
Q |
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| T |
15910959 |
tttgctaataagacttcaactccggctgtttcagcatccactgctcttacatttggtaagcc |
15910898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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