View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_low_72 (Length: 291)

Name: NF1763_low_72
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_low_72
NF1763_low_72
[»] chr7 (1 HSPs)
chr7 (160-280)||(43103836-43103956)
[»] chr5 (3 HSPs)
chr5 (160-280)||(27364598-27364717)
chr5 (160-197)||(27365640-27365677)
chr5 (160-197)||(22778251-22778288)
[»] chr4 (1 HSPs)
chr4 (160-274)||(1866168-1866282)
[»] chr1 (5 HSPs)
chr1 (160-274)||(10920063-10920177)
chr1 (160-274)||(23818199-23818313)
chr1 (167-253)||(16145326-16145412)
chr1 (158-196)||(28762445-28762483)
chr1 (160-197)||(4929814-4929851)
[»] chr6 (2 HSPs)
chr6 (218-280)||(2127735-2127797)
chr6 (160-197)||(1859798-1859835)
[»] chr2 (2 HSPs)
chr2 (160-208)||(3322916-3322964)
chr2 (160-197)||(13913466-13913503)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 43103836 - 43103956
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 259  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  43103836 tatcaagtgagaggacattttataatgagagatgagagcattaaattaggaccctaggatcaaattgaaaggtggagatgatatttcacgtaatgtggtg 43103935  T
Q  260 tatgactacctgattgccttt 280  Q
    |||||||||||||||||||||    
T  43103936 tatgactacctgattgccttt 43103956  T

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Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 27364598 - 27364717
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 259  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  27364598 tatcaagtgagagtacattttataatgagagatgagagcattaaattaggaccctagg-tcaaattgaaaggtggagatgatatttcacttaatgtggtg 27364696  T
Q  260 tatgactacctgattgccttt 280  Q
    |||||||||||||||||||||    
T  27364697 tatgactacctgattgccttt 27364717  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 27365677 - 27365640
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagag 197  Q
    |||||||||||||||||||||||||||| |||||||||    
T  27365677 tatcaagtgagaggacattttataatgagagatgagag 27365640  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 22778251 - 22778288
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagag 197  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  22778251 tatcaagtgagaggacatcttataatgagagatgagag 22778288  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 1866282 - 1866168
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 259  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  1866282 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 1866183  T
Q  260 tatgactacctgatt 274  Q
    | |||||||||||||    
T  1866182 tgtgactacctgatt 1866168  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 10920177 - 10920063
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 259  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  10920177 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 10920078  T
Q  260 tatgactacctgatt 274  Q
    | |||||||||||||    
T  10920077 tgtgactacctgatt 10920063  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 23818313 - 23818199
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 259  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  23818313 tatcaagtgagaggatattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 23818214  T
Q  260 tatgactacctgatt 274  Q
    | |||||||||||||    
T  23818213 tgtgactacctgatt 23818199  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 16145326 - 16145412
Alignment:
Q  167 tgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaat 253  Q
    ||||||||  ||||||||| | ||||||||||||||| |||| |||||||||| ||  | || ||||||||||||||||||||||||    
T  16145326 tgagaggaggttttataataagagatgagagcattaagttagcaccctaagattaatctgaatggtggagatgatatttcacttaat 16145412  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 28762445 - 28762483
Alignment:
Q  158 tctatcaagtgagaggacattttataatgaaagatgaga 196  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  28762445 tctatcaagtgagaggacattttagaatgagagatgaga 28762483  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 4929814 - 4929851
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagag 197  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  4929814 tatcaagtgagaggacatcttataatgagagatgagag 4929851  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 2127797 - 2127735
Alignment:
Q  218 atcaaattaaaaggtggagatgatatttcacttaatgtggtgtatgactacctgattgccttt 280  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2127797 atcaaattgaaatgtgaagatgatatttcacttaatgtggtgtatgactacctgattgccttt 2127735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 1859835 - 1859798
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagag 197  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  1859835 tatcaagtgagaggacattttaaaatgagagatgagag 1859798  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 3322916 - 3322964
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagagcattaaattag 208  Q
    |||||||||||||||||||||| ||||| |||||||||  |||||||||    
T  3322916 tatcaagtgagaggacattttaaaatgagagatgagagagttaaattag 3322964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 13913503 - 13913466
Alignment:
Q  160 tatcaagtgagaggacattttataatgaaagatgagag 197  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  13913503 tatcaagtgagaggacatcttataatgagagatgagag 13913466  T

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